Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0651 ATGACTGTGGCTTTGCACATTGGATTACCAACAAACAACACAGTAGGAGTTGTTGCTGCTGATGATGATGAGAAAAAGAAGGAAGAGAATAAGAGGTTTTGGATACCAAGTCCTTCACAAATCCTTGTTGGACCTATGCAGTTTGCTTGCTCCATTTGCAGCAAAACTTTCAACAGATATAACAATATGCAGATGCATATGTGGGGGCATGGTTCGGAATTCAGGAAAGGGCCAGACTCACTGAGAGGAACACAACCTGCGGCAATGCTAAGGCTACCATGTTATTGTTGTGCACAAGGTTGCAAGAACAACATCAACCATCCAAGGGCAAAGCCATTGAAGGATTTCAGAACTCTGCAAACACACTACAAGAGAAAGCATGGCACCAAGCCCTTCATGTGTAGAAAATGTGGCAAAACATTTGCTGTTAAAGGTGATTGGAGGACTCATGAGAAGAACTGTGGTAAGCTTTGGTATTGCACTTGTGGTTCCGATTTCAAGCATAAGAGGTCCCTTAAGGATCACATTAGATCCTTTGGTAAGGGTCACTCTCCTCATCCTTCTCTTGAAGGTTTTGAGGATGAGAAGGAATGCATTACCACTGGCTCTGATGAAGATGAACCTAAGTAG 630 0.4317 MTVALHIGLPTNNTVGVVAADDDEKKKEENKRFWIPSPSQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSLEGFEDEKECITTGSDEDEPK* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0651 209 PANTHER ZINC FINGER PROTEIN WIP2 2 206 IPR043584 GO:0003700|GO:0010468
Amo18g0651 209 SMART c2h2final6 132 152 IPR013087 -
Amo18g0651 209 SMART c2h2final6 95 127 IPR013087 -
Amo18g0651 209 SMART c2h2final6 48 70 IPR013087 -
Amo18g0651 209 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Amo18g0651 209 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Amo18g0651 209 MobiDBLite consensus disorder prediction 178 209 - -
Amo18g0651 209 SUPERFAMILY beta-beta-alpha zinc fingers 118 152 IPR036236 -
Amo18g0651 209 SUPERFAMILY beta-beta-alpha zinc fingers 30 71 IPR036236 -
Amo18g0651 209 Pfam Zinc finger, C2H2 type 48 67 IPR013087 -
Amo18g0651 209 Gene3D Classic Zinc Finger 47 70 - -
Amo18g0651 209 Gene3D Classic Zinc Finger 128 186 - -
Amo18g0651 209 ProSiteProfiles Zinc finger C2H2 type domain profile. 132 152 IPR013087 -
Amo18g0651 209 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 2 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0651 Amo-Chr18 9056397 9059901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0651 31 201 C2H2 Transcription Factor Family AT1G08290 87.931 3.46e-116 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo18g0651 zf-C2H2_6 8.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0651 - - ahf:112706908 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0651 18 9056397 9059901 Amo18g0651 18 9056397 9059901 ECH