Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0648 ATGCCTTGGAGTACTTCAAGACCTACCTCAAGTATGAGCCCAACCTTAAACATGAGGGAAGCCGTCCAGCACAAGTTCACCGAGTACTTGCGCCGGGCCGAGGAGATCCGGGCTGTTCTCGATGAAGGACAGCCCAGTCATACCTACTTTCGGCCAGTTGCAAAGCCCGGTGGTTGTGAGACTGGGCTGAACTCAGCGATCAAAAGGGAAAATCCCAATGTGAAGTGGAGTGACGTGGCAGGATTGGAGAGAGCTAAGCAGGCCTTTCAGGAGGCTGTTATTTTGCCTTTGAAGTTCCCTCAGTTCTTTACTGGTAAACAACAACAACAGAGAACTTTTTTGCTGTATGGACCATCTGGTACAGGGAAATCATATTTGGCTAAGGCCGTTGCAACAGAAGTTAACTTCACATTTTTCAGTGTTTCTTCATCAAACCTTGTATCAAAGTGGAAGAGTGAAAGTGCAAAGTTGGTTTCAAGCCTTTTCCAAACGGCTAGAGAAAATGCTCCTGCTTTCATTTTTATTGATGAGATAGATACCCTTTATGGAGAAGGCAATGAGAATGAAGCTTCAACAAAAACTAAAACAGAACTCATCGTACAGATGCAGGATATAGGATACACTGATCAGAAAATTCTGGTTATTGCAACAACAAATGCACCCTTCGCTTTGGACCAGCCAATAAGACGGCGGTTTGATAAGCGTATATACATCCCGCTACCAGACTTGAAGGCTCGCCAACACATGTTCAAGGTGCATTTAGGAGATACTCCTTATAACTTGACTGAGAGTGATTTTGAATACTTGGCGAGCAGGACAGAGGGATTTTCTGGTTCAGATATATCCATCTGTGTGGAGGATGTTTTATTGGAACCTATTCGGAAAACCCAAGATGCCATGTTCTTCTATGAGAATCCTGAGGGGATGTGGACCCTTTGTGAACCAGAACAACAAGGTGCTGTGCAAACTACAATGCAGGAGCTTGCTTCAAAAGGACTTTCTTCTAAGATCCTTCCAACCCCAGTTACTAGAACAGATTTTGAGAAGATACTTGCTAGGAAAAAACCTACAGTAAGCAAAGCTGATCTTAAGGTTTATGAAAGATTCACCAAGGAGTATGGAGAGGAAGGTTAA 1134 0.4374 MPWSTSRPTSSMSPTLNMREAVQHKFTEYLRRAEEIRAVLDEGQPSHTYFRPVAKPGGCETGLNSAIKRENPNVKWSDVAGLERAKQAFQEAVILPLKFPQFFTGKQQQQRTFLLYGPSGTGKSYLAKAVATEVNFTFFSVSSSNLVSKWKSESAKLVSSLFQTARENAPAFIFIDEIDTLYGEGNENEASTKTKTELIVQMQDIGYTDQKILVIATTNAPFALDQPIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPYNLTESDFEYLASRTEGFSGSDISICVEDVLLEPIRKTQDAMFFYENPEGMWTLCEPEQQGAVQTTMQELASKGLSSKILPTPVTRTDFEKILARKKPTVSKADLKVYERFTKEYGEEG* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0648 377 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 17 377 - -
Amo18g0648 377 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 373 IPR027417 -
Amo18g0648 377 Gene3D - 72 366 IPR027417 -
Amo18g0648 377 Gene3D - 242 357 - -
Amo18g0648 377 Pfam ATPase family associated with various cellular activities (AAA) 114 240 IPR003959 GO:0005524|GO:0016887
Amo18g0648 377 PANTHER AAA DOMAIN-CONTAINING 17 377 - -
Amo18g0648 377 SUPERFAMILY MIT domain 15 46 IPR036181 -
Amo18g0648 377 SMART AAA_5 109 242 IPR003593 -
Amo18g0648 377 CDD AAA 80 240 - -
Amo18g0648 377 Pfam Vps4 C terminal oligomerisation domain 310 374 IPR015415 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0648 Amo-Chr18 8986834 8998466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0648 68 300 Miscellaneous Gene Families AT3G02450 35.685 2.78e-36 137
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0648 18 8986834 8998466 Amo13g0167 13 2078760 2082676 PCT
Amo13g0167 13 2078760 2082676 Amo18g0648 18 8986834 8998466 PCT