Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0626 ATGGTATATATATATATCCCTCTCTTCAACACCCTTGCATGCATCAACCAAGTATCCGCCATTGTCATGGAGTTTGAGAATAACGAAGAATCACTGTATTACTATTCTTCTTCTTCATCACTATCTTCTTCTACTTCATCTCAAACCCAACGCTCGGCCATCAGCCCACCGCCATCGTCATCGTCGCCATCACGCAGTCAGAAGAGGAGATCGGGGAGGAAGAAGTTCCGAGAGATGAGACACCCGGTGTACAGGGGTGTCCGGCGGAGGAACGGCAACAAGTGGGTATGCGAAGTGAGAGAACCAATCAAGAAATCAAGAATATGGCTCGGAACTTACCCTACCCCTGAAATGGCCGCTAGGGCACACGACGCCGCAGTTCTGGCACTTAGAGGCACCTCAGCCACCTTCAATTTCCCTCTCTCCGTCCCCCTTCTTCCCCTTGCGGAGTCATCTTCACCTCAACATATTCGAGAAGCTGCTTCCAAAGCCGCACAACAAACTAGTAATAATGATATTACTAACCCTCCTGTTTCTTCTTCAAATATGAATCTTTGTGTTGGTGTTGATGGTGGTGGTAGTGGTGGAGTGGGGTCGATTTCATCGACGACGTTCTTTGATGAGGAGGCAATGTTTAACATGCCTGCATTGCTTGATAGCATGGCGGAGGGTTTGCTTATAACACCACCGTCCATGAAGCGAGGAGCTTTTCATGATGATGATGAATTTCAAACTGACCTCACTCTCTGGAATTTCGATTAA 762 0.4751 MVYIYIPLFNTLACINQVSAIVMEFENNEESLYYYSSSSSLSSSTSSQTQRSAISPPPSSSSPSRSQKRRSGRKKFREMRHPVYRGVRRRNGNKWVCEVREPIKKSRIWLGTYPTPEMAARAHDAAVLALRGTSATFNFPLSVPLLPLAESSSPQHIREAASKAAQQTSNNDITNPPVSSSNMNLCVGVDGGGSGGVGSISSTTFFDEEAMFNMPALLDSMAEGLLITPPSMKRGAFHDDDEFQTDLTLWNFD* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0626 253 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Amo18g0626 253 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Amo18g0626 253 ProSiteProfiles AP2/ERF domain profile. 83 140 IPR001471 GO:0003700|GO:0006355
Amo18g0626 253 Pfam AP2 domain 82 132 IPR001471 GO:0003700|GO:0006355
Amo18g0626 253 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 23 251 - -
Amo18g0626 253 CDD AP2 84 142 IPR001471 GO:0003700|GO:0006355
Amo18g0626 253 MobiDBLite consensus disorder prediction 44 66 - -
Amo18g0626 253 Gene3D AP2/ERF domain 83 142 IPR036955 GO:0003700|GO:0006355
Amo18g0626 253 MobiDBLite consensus disorder prediction 44 80 - -
Amo18g0626 253 SUPERFAMILY DNA-binding domain 83 142 IPR016177 GO:0003677
Amo18g0626 253 SMART rav1_2 83 146 IPR001471 GO:0003700|GO:0006355
Amo18g0626 253 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 23 251 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0626 Amo-Chr18 8739316 8740077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0626 40 253 AP2-EREBP Transcription Factor Family AT5G51990 46.759 7.73e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Amo18g0626 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0626 - - aip:107610400 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0626 18 8739316 8740077 Amo18g0626 18 8739316 8740077 ECH