Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0604 ATGAGTGAGAAAACGATCATGGAGCCTGACCACCATCAAAATGGGATCCGCACCAGACCTAATTTTCCACTCCAACTCTTAGACAATAAGAAAGATGATCTTCAGCARCCGCCGCCATCAGAGGATGGACCCGCCGCTGCTGCCAAGAAGCTGCCGCCAAAGCGAGCTTCCACAAAAGACAGGCACACCAAGGTCGACGGTCGCGGCCGACGWATCCGTATGCCGGCTGCAGCCGCTGCCAGGGTGTTCCAGCTGACGCGAGAGCTCGGCCACAAGTCTGACGGGGAGACCATCGAGTGGCTCCTCCAACAGGCTGAGCCCTCCGTCATCGCCGCCACCGGAACCGGTACTATCCCTGCAAAYTTCACTTCCCTCAACATCACGCTTAGAAGCTCAGGATCCACCATCTCTTCCCCCTCTCACTACTTCAGAGGCGCCACCGCCACCGCTACACCGTACCTTAGCCACGCAGCCAGCTTCTCCGCCGCTAGGAGCCGCAGCGAATGGGTGAGGAACGTGGCGGTGGAAGATTATTCTAGAAGAWTCATGTTCTCCGGCAGTGACAATAGTAATAATAATAACAACAACAACTCTGCTGCTGCTGCTACTACTGTCTTGAATTTCAACAACGCTGTTAATGATATTATGCAAAGCAAGCAAGAGGCTCGGGAAGAGCCCTGTAGCGGTGACGGTGGCGGCGGAGGAGATGCTTTGGGGAGGAAGAGAAGGCAAGAGGAGGTGTTCTCACAGCACCAGGGTACTCAGATGATGGGTAGCTACTTGTTACAGTCGAGTTCAGGGTCAATTCCGGCGACTCATGCTTCTATTCCGGCGACTTTTTGGATGATGGGCGGCGGTGGAGTTGGTGGTGGCAGTGGTAATAATGGCGGTGACCCAATTTGGGCAATTCCAACWGTTGGTAACAATAGTAGCATGTATAAAGGGGCTATGTCTGGTGGCARCGGYAACGGTGCCGGCGGCATTCATTTCATGAATTTTGCTTCTCCAATGGCTCTATTGCAAGCTCAACAACTAGGAGGAGGAGGAGGAGGAGGMGWCGGCGGCAGTGCAGTGCTGAGTGAAAGTAACCTGGGAATGCTTGCAGCTCTTAATGCATACAGGCCTATTATGGCTAACGGCAGCGGCGGCCAACATTCACCCCATGGAGATGGAGGTGATCAACAAAGTCAACCCTGA 1197 0.5363 MSEKTIMEPDHHQNGIRTRPNFPLQLLDNKKDDLQQPPPSEDGPAAAAKKLPPKRASTKDRHTKVDGRGRRIRMPAAAAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNITLRSSGSTISSPSHYFRGATATATPYLSHAASFSAARSRSEWVRNVAVEDYSRRXMFSGSDNSNNNNNNNSAAAATTVLNFNNAVNDIMQSKQEAREEPCSGDGGGGGDALGRKRRQEEVFSQHQGTQMMGSYLLQSSSGSIPATHASIPATFWMMGGGGVGGGSGNNGGDPIWAIPTVGNNSSMYKGAMSGGXGNGAGGIHFMNFASPMALLQAQQLGGGGGGGXGGSAVLSESNLGMLAALNAYRPIMANGSGGQHSPHGDGGDQQSQP* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0604 398 MobiDBLite consensus disorder prediction 215 252 - -
Amo18g0604 398 MobiDBLite consensus disorder prediction 1 15 - -
Amo18g0604 398 Pfam TCP family transcription factor 57 224 IPR017887 -
Amo18g0604 398 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 46 395 - -
Amo18g0604 398 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 46 395 IPR005333 GO:0003700
Amo18g0604 398 ProSiteProfiles TCP domain profile. 58 112 IPR017887 -
Amo18g0604 398 MobiDBLite consensus disorder prediction 183 202 - -
Amo18g0604 398 MobiDBLite consensus disorder prediction 1 66 - -
Amo18g0604 398 MobiDBLite consensus disorder prediction 378 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0604 Amo-Chr18 8508739 8510642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0604 41 344 TCP Transcription Factor Family AT3G47620 44.807 2.03e-56 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Amo18g0604 TCP 4.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0604 - - aip:107633962 608.601