Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0582 ATGGCGGTGATAGACGCGACGGGTTGCAGCGGCTCAACGGCGGCAGTTCTTCAGAATGACATCGATTTGCTTAACCCTCCAGCTGAGCTTGAGAAGAGGAAACACAAACTCAAGCGTCTTGTTCAATCTCCTAACTCTTTCTTCATGGATGTGAAGTGCCAAGGTTGTTTCAACATTACCACTGTATTCAGCCACTCTCAGACCGTCGTGGTGTGCGGAAACTGCCAGACAGTATTGTGCCAGCCGACAGGCGGCCGAGCGAGGCTGACCGAGGGCTGCTCTTTTAGGAAGAAGGGGGATTAA 303 0.5215 MAVIDATGCSGSTAAVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0582 100 Hamap 30S ribosomal protein S27e [rps27e]. 38 98 IPR000592 GO:0003735|GO:0005840|GO:0006412
Amo18g0582 100 PANTHER 40S RIBOSOMAL PROTEIN S27 14 99 IPR000592 GO:0003735|GO:0005840|GO:0006412
Amo18g0582 100 ProSitePatterns Ribosomal protein S27e signature. 52 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Amo18g0582 100 Gene3D - 19 99 IPR023407 -
Amo18g0582 100 Pfam Ribosomal protein S27 44 98 IPR000592 GO:0003735|GO:0005840|GO:0006412
Amo18g0582 100 PANTHER 40S RIBOSOMAL PROTEIN S27-RELATED 14 99 - -
Amo18g0582 100 SUPERFAMILY Zn-binding ribosomal proteins 44 98 IPR011332 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0582 Amo-Chr18 7894203 7896581 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0582 16 100 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 95.294 2.90e-59 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0582 K02978 - minc:123230388 175.637