Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0573 ATGGAGTTTTGGGGTGCTGAGGTTAAGGTTGGTGAGATTGTTAAAGTAGACAACAAGGAATCTGATGTCTGCATACACCTTTCTCAGGTTGCTCTTGGTGAGTCCAAGAAGGACAAACCCAGTGAGCCTGTGGTTGTTTATTTGAAAGTTGGAGAACAGAAATTTGTTGTGGGAACTCTTAACAAGGAGAAGTTTCCTCAAATTGCTCTTGATTTGGTTGTTGAGAAGGAGTTTGAGCTTTCCCACACTTCCAAGAACGCCAGTGTCCACTTTTGTGGATACAAGACATCTGTCGCTGATGATGAGGAGGATGATTTTTCAGACGATAGTAGCGATGAGGATCATCCATTGCCAGTTGCACAAAATGGAAAAACTGAAGTAAAAGTTGAGGAAGTAAAGGTTTCTCAATCTAAAAAACCTGATGCTCAGGCTGGTGCATCAAAACAAGTAAAGGTAGTTGAACCAAAGAAAACAGAGGATTCAGACGATGAATCTGATGAGGATGATGAAATTGACAGTTCAGATGAAGAGATGGAGGATGGCGAGAGTGATGAGGAGGGTGAAAGTGATGAAGATGATGATGAGGAAGATACCCCACCCAAGAAGGTGGACCAAGGAAAGAAGAGGCAAAATGAATCCGCGACAAAAACTCCTATTTCTAACAAGAAAGCAAAAAATGCTACCCCTGAAAAGACCGATGCTAAGAAAGGTGGCCATACAGCAACTCCTCACCCAGCAAAGAAGGGTGGAAAGACTCCAAACAGTGATGGCAAGGACACTCCCAAGTCTGGTGGACAATTCCTCTGCAAAAGTTGCAACAAGAATTTCAATTCTGAAACTGGTCTCCAACAACATAGCAAGGCTAAGCATGGTCAGTGA 879 0.43 MEFWGAEVKVGEIVKVDNKESDVCIHLSQVALGESKKDKPSEPVVVYLKVGEQKFVVGTLNKEKFPQIALDLVVEKEFELSHTSKNASVHFCGYKTSVADDEEDDFSDDSSDEDHPLPVAQNGKTEVKVEEVKVSQSKKPDAQAGASKQVKVVEPKKTEDSDDESDEDDEIDSSDEEMEDGESDEEGESDEDDDEEDTPPKKVDQGKKRQNESATKTPISNKKAKNATPEKTDAKKGGHTATPHPAKKGGKTPNSDGKDTPKSGGQFLCKSCNKNFNSETGLQQHSKAKHGQ* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0573 292 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Amo18g0573 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 267 292 IPR013087 -
Amo18g0573 292 SUPERFAMILY beta-beta-alpha zinc fingers 261 289 IPR036236 -
Amo18g0573 292 MobiDBLite consensus disorder prediction 160 198 - -
Amo18g0573 292 MobiDBLite consensus disorder prediction 256 292 - -
Amo18g0573 292 MobiDBLite consensus disorder prediction 226 240 - -
Amo18g0573 292 Gene3D Nucleoplasmin core domain 1 101 - -
Amo18g0573 292 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 288 - -
Amo18g0573 292 MobiDBLite consensus disorder prediction 100 292 - -
Amo18g0573 292 Gene3D Classic Zinc Finger 254 292 - -
Amo18g0573 292 ProSitePatterns Zinc finger C2H2 type domain signature. 269 290 IPR013087 -
Amo18g0573 292 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0573 Amo-Chr18 7673887 7676615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0573 1 109 C2H2 Transcription Factor Family AT5G03740 50.459 4.61e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo18g0573 NPL 7.2e-14 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0573 - - gmx:100792094 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0573 18 7673887 7676615 Amo18g0573 18 7673887 7676615 ECH
Amo18g0573 18 7673887 7676615 Amo13g0190 13 2268240 2270599 PCT
Amo13g0190 13 2268240 2270599 Amo18g0573 18 7673887 7676615 PCT