Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0553 ATGGAGAAAGGAGCGACTAAGAAGAAATCATCACCTCTCTCTCTGCAACAGTTCATCACTATCACCACCCCTCTTCTTGACTTGGAAAAGGAAGCTGAGATATCAAGCTCAATCGCCACAGGCGCATCAAGGAATTTGGATACTGCTCAAAAGAGAGGTTCCACAATCCTTAACTTGAAGTGTGTGGATGTCCAGACAGGGCTTATGGGAAAATCTCTGATTGAGTTCCAGTCTACAAAAGGAGATGTTCTTCCTGCACACAAGTTTAGTACTCACGACGTCGTCGTTTTAAAACTCAACAAGGCTGATGTAGGTTCTCCTGCTCTTGGACAAGGTGTTGTTTATAGATTAAAGGACTCATCAATAACTGTTGCTTTTGATGACATACCTGAAGATGGTTTAAACAGTCCCCTAAGGCTGGAAAAAGTTGCAAATGAGGTGACATATCGCAGGATGAAAGATGCATTAGTACAGTTGAGTAAAGGAGTGCATAAGGGTCCAGCTGCTGATCTAATTCCGGTCTTATTTGGGGAGAGGTCGCCAACAATGTCCAAGAAGGATGTTTCCTTCACTCCTTTTAATACCAAACTTGATCACTCTCAGAAAGGTGCAATTTCAAAAGCCCTATCTTCGAAGAATGTGTTTTTGCTACATGGACCTCCTGGAACTGGGAAAACTACAACAGTGGTGGAAATTATATTACAAGAAGTTAAACGTGGATCAAAGATTCTTGCTTGTGCTGCCTCAAACATTGCTGTTGATAACATTGTTGAGCGGCTAGTTCCACATAGGGTTAAGCTGGTGAGAGTAGGTCATCCTGCACGCTTATTGCCTCAAGTACTGGACAGTGCACTGGATGCTCAGGTACTACGAGGAGATAATAGTGGCCTTGCAAATGACATTCGWAAAGAAATGAAGGCATTGAATGGAAAGCTATTGAAAACCAAAGACAAAAGTACAAGGAGAGACATACAAAGGGAACTTAGGACTCTATCCAAYGAYGAGCGCAAAAGGCAGCAGCTTGCTGTAACAGACGTACTTAAAACTGCAGATGTAATATTGACTACTCTGATTGGGGCCTATTCTAAGAAACTCGACAATATGTCATTTGATTTGGTAATTATTGATGAAGCTGCTCAAGCACTTGAAATTGCATGTTGGATTCCTCTGTTGAAGGGCTCAAGATGTATCCTRGCAGGGGACCATCTTCAACTTCCTCCAACCATTCAAAGTGTTGAAGCTGAGAAGAAAGGTTTAGGAAGAACCCTCTTTGAACGACTTGCAGAAATATATGGAGACGAGGTCACATCTATGCTTACAGTCCAGTACCGTATGAATGAACTCATCATGGATTGGTCTTCTAAAGAACTTTACAACAGCAAGATCGAGGCTCATGCTAGTGTTGCTGCACATACGCTACATGATCTTGACAATGTGAAGAAGACATCATCAACTGAACCAACTCTTCTTCTCATAGACATTGCTGGATGTGATATGGAAGAAAAGAAAGATGAAGAAGATAGCACTCTTAATGAAGGTGAAGCTGAGGTTGCTATCGTTCATGCCAAGAGACTCGTTCAAAGTGGTGTGCCTCCTTCTGATATTGGAATTATTACCCCATATGCTGCCCAGGTTGTTTTGCTCAAGATGTTGAGAAACAATGAGAATCAGCTGAAGGATGTCGAAATCTCAACAGTTGATGGGTTTCAGGGAAGGGAGAAGGAAGCCATTATTATATCCATGGTCCGATCCAACTCAAAAAAGGAGGTGGGCTTTCTGAGTGATCGCCGGCGTATGAATGTGGCTGTGACACGGGCACGAAGGCAATGCTGTCTTGTCTGCGACACCGAGACAGTCAGTAGTGATGCATTTCTGAAGCGGTTGATAGAGTATTTTGAAGAGCATGGCGAGTATCAGAGTGCATCCGAATACCAGAACGAAACTATTGGTTGTTTTGATGATGTTGCTAGTAGATCTATGAAGGTTTTCTCAATCCAAGTCATGGAGTGTAAGACAAAAGCAAGGGTTAACATGAATTGTCAAAAAGCTGCTAATTAA 2058 0.4232 MEKGATKKKSSPLSLQQFITITTPLLDLEKEAEISSSIATGASRNLDTAQKRGSTILNLKCVDVQTGLMGKSLIEFQSTKGDVLPAHKFSTHDVVVLKLNKADVGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALVQLSKGVHKGPAADLIPVLFGERSPTMSKKDVSFTPFNTKLDHSQKGAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRVGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKALNGKLLKTKDKSTRRDIQRELRTLSNDERKRQQLAVTDVLKTADVILTTLIGAYSKKLDNMSFDLVIIDEAAQALEIACWIPLLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAEIYGDEVTSMLTVQYRMNELIMDWSSKELYNSKIEAHASVAAHTLHDLDNVKKTSSTEPTLLLIDIAGCDMEEKKDEEDSTLNEGEAEVAIVHAKRLVQSGVPPSDIGIITPYAAQVVLLKMLRNNENQLKDVEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDAFLKRLIEYFEEHGEYQSASEYQNETIGCFDDVASRSMKVFSIQVMECKTKARVNMNCQKAAN* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0553 685 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 8 645 - -
Amo18g0553 685 CDD DEXXQc_SMUBP2 196 444 - -
Amo18g0553 685 Gene3D - 23 427 IPR027417 -
Amo18g0553 685 CDD SF1_C_Upf1 445 633 IPR041679 -
Amo18g0553 685 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 634 IPR027417 -
Amo18g0553 685 Coils Coil 298 318 - -
Amo18g0553 685 Gene3D - 443 650 IPR027417 -
Amo18g0553 685 TIGRFAM TIGR00376: putative DNA helicase 345 642 IPR004483 GO:0003677|GO:0005524
Amo18g0553 685 SMART ultradead3 193 444 IPR014001 -
Amo18g0553 685 PANTHER HELICASE WITH ZINC FINGER 2 8 645 - -
Amo18g0553 685 SMART AAA_5 211 463 IPR003593 -
Amo18g0553 685 Gene3D - 41 143 - -
Amo18g0553 685 Pfam AAA domain 420 616 IPR041679 -
Amo18g0553 685 Pfam AAA domain 196 411 IPR041677 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0553 Amo-Chr18 7425735 7431391 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0553 170 380 Core DNA Replication Machinery Family AT1G08840 27.488 7.67e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0553 K19036 - gmx:100810545 1142.49