Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0541 ATGGCGGAGGACCGGAAGAATGAGGGAAGTGACTACAGTTCGGAGGAGGAAGGAACTGAGGATTACAGGCGCGGAGGGTACCATGCGGTTCGGATTGGGGATACATTCAAGAATGGATGCTATGTGGTTCAGAGCAAGCTTGGTTGGGGCCATTTTTCCACCGTGTGGCTCGCTTGGGACACTCAGAAATCGAGATATGTCGCCCTAAAAATTCAGAAGAGTGCTCAGCACTACACTGAAGCAGCAATGGATGAAATAAAGATTCTCAAACAAATTGCAGATGGAGATCCACATGACAATAAATGTGTTGTGAAGCTTTTGGATCACTTCAAGCATTCAGGACCCAATGGCCAGCATGTCTGTATGGTTTTTGAATTCCTTGGGGACAATCTTCTCACTCTTATCAAGTATAGTGATTATCGAGGAGTTCCTCTTCCCATAGTTAAGGAAATCTGCTTCCATATTTTGGTGGGTTTGGATTACTTGCATCGTGAGCTTTCTATAATACACACTGATTTGAAGCCGGAGAATGTCTTGCTTCTGTCACCACTGGATCCATCTAAGGATCCTAGGAAATCAGGCATTCCACTTATTGCTCCAAATACGAAGGAGAAGATCAGCAATGGGACCATAAAAGACGAAAAAAGTTTGCATGCAGACTTGACCAAGAACCAGAAAAAGAAAATGCGGAAAAAGGCTAAAAAGGCAGCTCAAGCTTGTGTTGGGATGGAAAGTCCCGAGGAAGCCGAGGAGGATGGTAAAACACCTGAGCAAGATGAATGTAGTAAAGATGTGGAACTAAGTTTAGAATCCAGTGAAGTTAATGGTTCTGTGGGCAAAGATGAATCGACAAAGGCTTCTGAAACCAAGGATGATCCCCAAGGAAGCCGTGGTCAAAGGAAATCTGAAAGAAAGAAGTTACTTGCCTCTGCTGATCTTAAGTGCAAGCTGGTTGATTTTGGTAATGCGTGTTGGACTTATAAACAATTCACAAACGATATTCAGACGAGGCAGTATAGATGTCCTGAAGTTATTCTCGGATCAAAATACTCAACTCCAGCAGATCTATGGTCTTTTGCGTGCATTTGCTTTGAGCTTGCGACTGGTGATGTTCTTTTTGATCCTCACAGTGGTGACAACTATGACAGGGATGAGGATCATCTGGCCTTGATGATGGAGCTTCTCGGAATGATGCCTCGCAAGATTGCATTAGGTGGTCGTTATTCGCGCGAGTTTTTCAATAGATATGGTGATTTGAGGCACATCCGTCAGTTGCGGTTCTGGCCTCTTAACAAAGTACTGATGGAGAAATATGATTTCAGCGAGCAAGATGCAAATGACATGGCTGGCTTCATTATTCCATTACTGGATTTTGTCCCTGACAAGAGGCCAACAGCAGCTCAGTGCCTTACTCATCCATGGTTGAGTACAAGACCTCAGACTCTCAAACCTTCGTCCACACCTGTGCAACCGGGGGAGAAAGATGGAGAGACATTGGAAAAGACAAAGGAAAAGGCTGAGCTGGAAGCTGTGGAAGTTGGCATTGGGAATATAGCTATTGATGGAGCTCCAAAGCCAGTTGAAATGTCCCAAACTATACAACAGTTGTCAAAATAA 1617 0.4422 MAEDRKNEGSDYSSEEEGTEDYRRGGYHAVRIGDTFKNGCYVVQSKLGWGHFSTVWLAWDTQKSRYVALKIQKSAQHYTEAAMDEIKILKQIADGDPHDNKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVPLPIVKEICFHILVGLDYLHRELSIIHTDLKPENVLLLSPLDPSKDPRKSGIPLIAPNTKEKISNGTIKDEKSLHADLTKNQKKKMRKKAKKAAQACVGMESPEEAEEDGKTPEQDECSKDVELSLESSEVNGSVGKDESTKASETKDDPQGSRGQRKSERKKLLASADLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSREFFNRYGDLRHIRQLRFWPLNKVLMEKYDFSEQDANDMAGFIIPLLDFVPDKRPTAAQCLTHPWLSTRPQTLKPSSTPVQPGEKDGETLEKTKEKAELEAVEVGIGNIAIDGAPKPVEMSQTIQQLSK* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0541 538 CDD STKc_SRPK 30 475 - -
Amo18g0541 538 ProSiteProfiles Protein kinase domain profile. 41 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g0541 538 MobiDBLite consensus disorder prediction 1 20 - -
Amo18g0541 538 MobiDBLite consensus disorder prediction 206 305 - -
Amo18g0541 538 SUPERFAMILY Protein kinase-like (PK-like) 36 489 IPR011009 -
Amo18g0541 538 Pfam Protein kinase domain 41 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g0541 538 Pfam Protein kinase domain 308 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g0541 538 MobiDBLite consensus disorder prediction 283 305 - -
Amo18g0541 538 MobiDBLite consensus disorder prediction 477 500 - -
Amo18g0541 538 SMART serkin_6 41 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g0541 538 Gene3D Phosphorylase Kinase; domain 1 17 123 - -
Amo18g0541 538 Gene3D Transferase(Phosphotransferase) domain 1 124 476 - -
Amo18g0541 538 MobiDBLite consensus disorder prediction 207 223 - -
Amo18g0541 538 PANTHER SERINE KINASE-LIKE PROTEIN 9 537 - -
Amo18g0541 538 MobiDBLite consensus disorder prediction 477 492 - -
Amo18g0541 538 Coils Coil 219 239 - -
Amo18g0541 538 MobiDBLite consensus disorder prediction 268 282 - -
Amo18g0541 538 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 537 - -
Amo18g0541 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Amo18g0541 538 ProSitePatterns Protein kinases ATP-binding region signature. 47 70 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0541 Amo-Chr18 7291355 7294840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0541 5 525 EF-hand Containing Proteins AT5G22840 69.925 0.0 728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Amo18g0541 Pkinase 8.6e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0541 K08832 - gmx:100791829 857.44