Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0535 ATGGCTATTGCTGGTGTGCATAGTGTGGCTGTGATTGACTCTACACTTCTTAGGGAGTCTCATTCTCAGTTATCAGGTAGGCGAGGGGATGGAGGAGGGAGGGGAGGTGCCCGTTCATCTTCCCTCTTGCAAATGTGGCGAGAAATCGAGGATGAACACATGGCGGGTCAAGTTCAGGGGAGGTCTGGGGAGTTGTTAATTAGGCAGAGGAGTGATGGATTGATCTCGGACCTGTCGCAGGAAGATGTCCCTCGGAGAGGAGAAGGTGAAGGGCATATGATAGAAGATGCAATTTCGGGTGAGAATGAATCAGAAACATGGTCACAGTCACAAAGTCAGAATGATTCTCGTGACGATGAACATGAGGGTTTAGGCAATTCTAATTGTGAGAGCTCTTCAGATCTTGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATTTTCAGGGAATGGATGAATAGTGGTGCTGGGGATCATCGTGCATCAAATGTTCCCAGAGGAAGTGGTGGTTCAAGGAGACAGTGGCTTGGGGAAACTGAGCAGGAGAGGGTGAGTATCATTAGGGAGTGGGTACAGATGAGTAGCCAGCAGAGAGTTGTGTCTTCTAGTGAAAACAGGGAAGACCAATCTTTAGAGATCGGTAACCAAATTGATCGTGTTCGGGATGGATTCGTTGTTAATCAGCATGACGGCCAATCTGAGCATACACGGAGGGGAATCCGTAGATTGCGTGGCCGGCAGGTTCTGCTTGATATGCTCAAGAAGGCTGAGGTGGAAAGGCAAAGAGAAGTTCAGGAGTTGTTTGAACACCGGGCTGTATCCCGTTTCCCCCACCGCAATCGCATTCAGGCATTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATCAACTGATAATAACAGGTCCACTTCCATTGCGGAAAGTGAATTAGGTTTATTGAGGCAAAAACAGACTGTATCAGGTCTAAGGGAAGGATTCTTTTCCAGAAAGGACAATTCTGGTTGCAGTCAAGCAACAAGCAACCTTTCCGATGCCTCATCTGACACTGATGGTGATGTTAATGCAATTGAACATGCTGGAGCCAGCAGTTCACAAACTGTCCCATCTGTACATGCTAAAAAGTTGGAGTCTAATAACAGTGGAAGTGATGAAATTGGCATATCTGGCAGGGAAAACTGTTTTCAACAATCTACTTGTGAGAATCTAGACTGTCAAGATTCTGGTGCTTATGCTAATGAAATTGATCAGGCATTGGCTTCAAGTGTTGAGGTTGAAGGCAGCGATAGCATTGGACAAAATGTTGTTATGGATACTGAAGATGCTTCTAGTGGCCTCACCCAACAAAGGTTGCAAATTGAAGGTAGAGATCCTAGCAATATGCAGGTAAATGAGGTACATATTGAGCAATCTGAGCTGGGTGGTATAACTGATAATGAAAGCTACTTATCACATCACAGCAATAGTATAGAGGGCAATATTGCTGCTGATGTAGATTGGGATGTATCTGTTGCTCCAGAAGTAGAGCAACCAGAAGAGGCTATTTCTGAAAATGAAGGAAGTGACTGGCATCAAACTAGCATTGAATGGAGTAGCACTGAGGATGGTGTTGACAATAATCAACTCGGTGGCTCATCAAATGAACTACCTCAAAACACATTTGGAAATGAAGATGGAGAAAATTCTCGCCTACAAGAAGGGCCTGAAGTGTGGCAGGAGGACAGCGGCTTTCAAGAGGCTGTAGAAATTTGGTTGGGAGGACCTTCTGATCATGAAGCAGCTCCAGTTGGTAGAATTCATGGATTTTATTTTCCCGAAGATGACAATGTGTACAGTGTCGAACTCAGGGAACTGCTAAGTAGGAGAAGTGTCTCAAACCTCCTTCGCAGCAGTTTTCGTGAAAGCCTTGATCAGTTGATACAATCATACGTTGAAAGGCAGAGTCATGCTAATGTTGAGTGGGAGCTCCAAGAAACAACCACCCCTTTCTCTCCCTCGGCAGCGCAGGAGCTTGAGCAACAGAACAGGGATCCGATTGTTGGTACTCAGGATGCTGTTAATAGCTCACTTGGTCGTCAACCCTTGCCGCCACCACCTCCGCCACCGCCGATATGGGATCACCGCCGCTCCCGTCATGACAGATGGTCACCTCATGATATAAATAATCAACGCCTAGGAATGGAATGGGATGTCATTAATGACTTGAGAGTTGACATGGTTAGGCTACAGCAAAGAATGAACAATATGCAGAGAATGCTGGAGACCTGCATGGATATGCAGCTTGAGTTGCAACGCTCAATAAGACAAGAGGTTTCTGCGGCCCTAAATCGCTCAACTGGTTCATCAGGAACACGTGACCATGATTCACCAGATGATAAATCCAAATGGGAATGCGTGAGGAAAGGGGTTTGCTGCATTTGCTGCGAAAGCAATATTGATTCTCTCTTGTACAGATGTGGGCACATGTGCACATGTTCTAACTGTGCTAATGATTTGCACCGAAGTGGAAGGAAGTGTCCAATGTGTCAAGCACCAGTTGTTGAAGTAATTCGTGCTTATTCCATACTATAG 2565 0.4569 MAIAGVHSVAVIDSTLLRESHSQLSGRRGDGGGRGGARSSSLLQMWREIEDEHMAGQVQGRSGELLIRQRSDGLISDLSQEDVPRRGEGEGHMIEDAISGENESETWSQSQSQNDSRDDEHEGLGNSNCESSSDLGEVERERVRQIFREWMNSGAGDHRASNVPRGSGGSRRQWLGETEQERVSIIREWVQMSSQQRVVSSSENREDQSLEIGNQIDRVRDGFVVNQHDGQSEHTRRGIRRLRGRQVLLDMLKKAEVERQREVQELFEHRAVSRFPHRNRIQALLRGRFLRNDRSTDNNRSTSIAESELGLLRQKQTVSGLREGFFSRKDNSGCSQATSNLSDASSDTDGDVNAIEHAGASSSQTVPSVHAKKLESNNSGSDEIGISGRENCFQQSTCENLDCQDSGAYANEIDQALASSVEVEGSDSIGQNVVMDTEDASSGLTQQRLQIEGRDPSNMQVNEVHIEQSELGGITDNESYLSHHSNSIEGNIAADVDWDVSVAPEVEQPEEAISENEGSDWHQTSIEWSSTEDGVDNNQLGGSSNELPQNTFGNEDGENSRLQEGPEVWQEDSGFQEAVEIWLGGPSDHEAAPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQSHANVEWELQETTTPFSPSAAQELEQQNRDPIVGTQDAVNSSLGRQPLPPPPPPPPIWDHRRSRHDRWSPHDINNQRLGMEWDVINDLRVDMVRLQQRMNNMQRMLETCMDMQLELQRSIRQEVSAALNRSTGSSGTRDHDSPDDKSKWECVRKGVCCICCESNIDSLLYRCGHMCTCSNCANDLHRSGRKCPMCQAPVVEVIRAYSIL* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0535 854 SUPERFAMILY RING/U-box 801 847 - -
Amo18g0535 854 MobiDBLite consensus disorder prediction 771 791 - -
Amo18g0535 854 MobiDBLite consensus disorder prediction 531 570 - -
Amo18g0535 854 MobiDBLite consensus disorder prediction 329 349 - -
Amo18g0535 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 779 852 IPR013083 -
Amo18g0535 854 MobiDBLite consensus disorder prediction 531 558 - -
Amo18g0535 854 MobiDBLite consensus disorder prediction 20 39 - -
Amo18g0535 854 MobiDBLite consensus disorder prediction 329 384 - -
Amo18g0535 854 MobiDBLite consensus disorder prediction 98 138 - -
Amo18g0535 854 Coils Coil 730 757 - -
Amo18g0535 854 Pfam Zinc finger, C3HC4 type (RING finger) 800 846 - -
Amo18g0535 854 MobiDBLite consensus disorder prediction 357 384 - -
Amo18g0535 854 MobiDBLite consensus disorder prediction 153 176 - -
Amo18g0535 854 CDD mRING-HC-C3HC5_NEU1 802 840 - -
Amo18g0535 854 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 853 - -
Amo18g0535 854 PANTHER PROTEIN, PUTATIVE-RELATED 1 853 - -
Amo18g0535 854 ProSiteProfiles Zinc finger RING-type profile. 802 841 IPR001841 -
Amo18g0535 854 MobiDBLite consensus disorder prediction 682 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0535 Amo-Chr18 7181646 7186689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0535 802 848 C3H Transcription Factor Family AT3G06140 38.298 1.36e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0535 - - vun:114184870 1077.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0535 18 7181646 7186689 Amo18g0535 18 7181646 7186689 ECH