Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0531 ATGATTTCAACAAGTATCGAACGAAATCAAGGGTTGATGATGCAGATGTTCCCTACTCCTCCTCCTCCTCCTGGGAGCGAGGATTTGGTGTCACAACAATCTATGGAAATAGTTAATAACTCTTCTGTTGCTTCTTCTTCTTCATCTACAGCTTCTTCTTCACACTCAAGCTCCCTTCTCTTCAATCTCTCTGTTCTCAAGGACAAGCTTAATCAGGTTCAGACCCTCGTTGGTGTTATTCTCTCCCCAGATCAGAACCTTCAGGACTCAACTACCTCCATGGCTGTTTCAAGCATGAACTCCACAATCCAAGAAATCATAGTTACTGCAACTTCAATGATGTTCACCTGCCAACAGATCGCTCTCGCTTTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAGGTACCATTGCTACTACTGTTGCTTTCGCCAACAACCACCATGAATTGCACCAACAACATCAAAGGTTATTGATCAATAATAACAATAATAATATTAGAGGTCATGGCCATGGTTTCTTTTCTAGTACTACTGATTCTGAGGCACTGGATAATTGGCTAGGTGAAAGCTATAACAATACTGGTGTTGATTGTAAGGTTAATAATAACGATGATGATGATCCAAGTGTTGAAATTAGTGATACCAAAGAAGGAGCAAAGAAGTTGGATATAATTGAATTGGATGCTGAGGATTTGTTGGCGAAATACACACATTACTGCAGTGTTTGTGGGAAGGGGTTCAAGCGCGATGCGAATTTGAGGATGCACATGAGAGCTCATGGGGATGAATACAAAACGAGTGCCGCATTGAGTAACCCTTTGAAGCAGAACAATAACGAGAATGGTGATTGCTTGCCGAAGAAGTACTCGTGCCCTCAAGAAGGGTGTAGGTGGAACCAGAAGCACGCAAAGTTTCAGCCATTGAAGTCAATGATATGTGCAAAGAATCACTACAAGAGAAGCCATTGTCCGAAGATGTACGTGTGCAAGAGGTGCAACCAGAAGCAGTTCTCGGTGCTGTCTGATCTGAGAACACATGAGAAGCACTGTGGGGATCTCAAATGGCAGTGTTCTTGTGGCACCACTTTCTCCAGGAAAGACAAGCTTATGGGACATGTTGCTTTGTTTGTTGGCCACCGAGCCCTTTCCATTGCCTTCCACCAATACAATAGTGCAGCTTAA 1182 0.4374 MISTSIERNQGLMMQMFPTPPPPPGSEDLVSQQSMEIVNNSSVASSSSSTASSSHSSSLLFNLSVLKDKLNQVQTLVGVILSPDQNLQDSTTSMAVSSMNSTIQEIIVTATSMMFTCQQIALAFPPPPPPPPPPGTIATTVAFANNHHELHQQHQRLLINNNNNNIRGHGHGFFSSTTDSEALDNWLGESYNNTGVDCKVNNNDDDDPSVEISDTKEGAKKLDIIELDAEDLLAKYTHYCSVCGKGFKRDANLRMHMRAHGDEYKTSAALSNPLKQNNNENGDCLPKKYSCPQEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHRALSIAFHQYNSAA* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0531 393 Gene3D Classic Zinc Finger 216 294 - -
Amo18g0531 393 SUPERFAMILY beta-beta-alpha zinc fingers 236 263 IPR036236 -
Amo18g0531 393 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 33 387 IPR044300 GO:0010044|GO:0010447
Amo18g0531 393 ProSitePatterns Zinc finger C2H2 type domain signature. 240 260 IPR013087 -
Amo18g0531 393 Gene3D Classic Zinc Finger 325 375 - -
Amo18g0531 393 PANTHER OS08G0562300 PROTEIN 33 387 - -
Amo18g0531 393 MobiDBLite consensus disorder prediction 10 29 - -
Amo18g0531 393 SMART c2h2final6 327 349 IPR013087 -
Amo18g0531 393 SMART c2h2final6 238 260 IPR013087 -
Amo18g0531 393 SMART c2h2final6 289 322 IPR013087 -
Amo18g0531 393 ProSiteProfiles Zinc finger C2H2 type domain profile. 238 265 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0531 Amo-Chr18 7131743 7134263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0531 31 379 C2H2 Transcription Factor Family AT5G22890 47.443 1.87e-109 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo18g0531 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0531 - - gmx:100802769 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0531 18 7131743 7134263 Amo18g0531 18 7131743 7134263 ECH
Amo18g0531 18 7131743 7134263 Amo08g1149 08 19120127 19121518 hybridization