Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0530 ATGGAGATGGAATTAGGCATAGGCACGGAAGAGTTTCTTAACGATGCTTCCCACATCGCCAAGGGAAAGCGCACCAAGAGGCACAAACCCTTCTCCCCTTGCGACGTCGCCGCCATCACTTCCAGCTCCTCAAGCGCCAACGACTCTGCTTCCTTCTCTTCCACCACCACCTTTCAAGACGAAGAACAAGACATGGCTAACTGCTTGATTCTCCTTGCTCAAGGAAAAACAGGCGGAGAAGAAACCGATGATGAAGAAGATAACAAGATGAGAGAGAAGAGCAGAAGAATATCGGAGGTCACGACAACCGCAACTACAAAAATCGGTTTCTACATCTATGAATGCAAAACGTGCAACCGAACATTCCCTTCTTTTCAAGCTCTTGGAGGCCATAGGGCCAGCCATAAAAAGCCAAAGGTCACATCAGATGATAAAAAGAAACCGCAACCGCAACTACAACCACAACCACAACCAAATACTTTGGCGCTAATCACAAATTGCGACTTTGAAGAAACAAAGCAAGTACGTGTGATGACAACAAGCCCTCCAATTTCCCTTCAATTGGGATATGGTGGTGCTACCAACAACAATAACGGCAAGCCCAAGATTCATGAGTGTTCAATTTGCGGTTCAGAATTCACATCTGGACAAGCCCTTGGTGGTCACATGAGGAGGCATAGGACAGCTGTCATCACTACTACTAGTCCTCAGCCAACTTGTGACGTGCCTGCCAGGCTGGAGGTCGTTAAGCCGCCGCGGAATCTTCTGGAATTGGATCTTAACCTTCCGGCGCCGGCGGACGACGACCACCACCACCGGGATTCCCAGTTTCAGTTCTCGTCCACACAGAAAACCATGATGCTTTCTGCTGCACCGCCTTTGGTGGATTGTCATTATTAA 900 0.4856 MEMELGIGTEEFLNDASHIAKGKRTKRHKPFSPCDVAAITSSSSSANDSASFSSTTTFQDEEQDMANCLILLAQGKTGGEETDDEEDNKMREKSRRISEVTTTATTKIGFYIYECKTCNRTFPSFQALGGHRASHKKPKVTSDDKKKPQPQLQPQPQPNTLALITNCDFEETKQVRVMTTSPPISLQLGYGGATNNNNGKPKIHECSICGSEFTSGQALGGHMRRHRTAVITTTSPQPTCDVPARLEVVKPPRNLLELDLNLPAPADDDHHHRDSQFQFSSTQKTMMLSAAPPLVDCHY* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0530 299 MobiDBLite consensus disorder prediction 75 98 - -
Amo18g0530 299 Pfam C2H2-type zinc finger 113 138 - -
Amo18g0530 299 Pfam C2H2-type zinc finger 204 228 - -
Amo18g0530 299 ProSitePatterns Zinc finger C2H2 type domain signature. 206 226 IPR013087 -
Amo18g0530 299 Gene3D Classic Zinc Finger 111 226 - -
Amo18g0530 299 SUPERFAMILY beta-beta-alpha zinc fingers 112 226 IPR036236 -
Amo18g0530 299 MobiDBLite consensus disorder prediction 78 98 - -
Amo18g0530 299 SMART c2h2final6 113 135 IPR013087 -
Amo18g0530 299 SMART c2h2final6 204 226 IPR013087 -
Amo18g0530 299 MobiDBLite consensus disorder prediction 129 159 - -
Amo18g0530 299 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 14 299 - -
Amo18g0530 299 PANTHER ZINC FINGER PROTEIN ZAT5 14 299 - -
Amo18g0530 299 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Amo18g0530 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 204 226 IPR013087 -
Amo18g0530 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0530 Amo-Chr18 7112729 7114185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0530 5 299 C2H2 Transcription Factor Family AT2G28200 40.187 1.85e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo18g0530 zf-C2H2_6 4.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0530 - - aprc:113858527 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0530 18 7112729 7114185 Amo18g0530 18 7112729 7114185 ECH
Amo16g2005 16 60653803 60655060 Amo18g0530 18 7112729 7114185 ECH