Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0528 ATGGATGCTCACCAAGAAACACTGATATTCAACAATGATTATGAGGTGCATGATTTCACTGAGGACCCCAACTTTGATCAGCTCATCAATTTAATTAGAGGGGATAATAATAATGAAGATGATGCTGCTGTGTTCTTTAACTATGGTTCAGACATTATCATCAATGATTGCTTCCTTGATGATAATCAGAATCAGAATCATTTACTTCTTCCATATGATGAGATTCATCAGAGCCATAACAACAATAGTAGCAATGAAGTGATGATGAATAATGTGTGTGGTGATGATCCTAGCCCTACTAATCTTATTAGCTCCTTCTCTTGCTTTGATGAAGGGGTGGTTAATAGAGAAAATGAAGGAGAGTATTCTTCTGCAACCACAACTGCAACTGATGAGGCTAATCTTAGTGGTAAACCAAGGCTGAAAGCTGATAGGTCCAAGACTCTCATCTCTGAGAGGAGGAGGAGAAGCAGAATGAAGGAGAAGCTTTATGCACTCCGCTCTTTGGTCCCTAACATAACAAAGATGGATAAGGCATCGATCATTGGAGATGCATTATCGTACGTGCATGAGCTTCAAGCACAAGCTAAGAAGCTAAAGGCAGAGGTTGCAGGACTTGAAGCATCTCTGTTTGTGTCAGAAAATTACAAAGCATCCTTTGATGACAATTACATAAAAACTTTTCAAGTCACACACAATAGCCACCCGATCAACAAGAAGATAGTGCAGATAGAGATGGTTCAAGTGGAAGAAAGAGGGTATTATGTGAAGATAGTGTGCAACAAAGGAGGAGGAGTTGCTGCATCACTCTACAGGGCTCTCGAGTCTCTTGTGGGTTTCAGTGTTCGGAATTCAAACTTTGAAACTGTTTGTGACACTATACTACTTACATTTACATTGAATGTTAAAGGCTTTGAACCAGAAGTTAACCTGCCAAACTTGAAGCTATGGGTGACAGGCGCTCTTCTCAACCAAGGCTTTGAATTCATGGCAAATTTTCATTATTGA 1008 0.3978 MDAHQETLIFNNDYEVHDFTEDPNFDQLINLIRGDNNNEDDAAVFFNYGSDIIINDCFLDDNQNQNHLLLPYDEIHQSHNNNSSNEVMMNNVCGDDPSPTNLISSFSCFDEGVVNRENEGEYSSATTTATDEANLSGKPRLKADRSKTLISERRRRSRMKEKLYALRSLVPNITKMDKASIIGDALSYVHELQAQAKKLKAEVAGLEASLFVSENYKASFDDNYIKTFQVTHNSHPINKKIVQIEMVQVEERGYYVKIVCNKGGGVAASLYRALESLVGFSVRNSNFETVCDTILLTFTLNVKGFEPEVNLPNLKLWVTGALLNQGFEFMANFHY* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0528 335 MobiDBLite consensus disorder prediction 119 138 - -
Amo18g0528 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 192 IPR011598 GO:0046983
Amo18g0528 335 Pfam Helix-loop-helix DNA-binding domain 150 193 IPR011598 GO:0046983
Amo18g0528 335 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 10 331 - -
Amo18g0528 335 SMART finulus 149 198 IPR011598 GO:0046983
Amo18g0528 335 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 10 331 - -
Amo18g0528 335 Coils Coil 189 209 - -
Amo18g0528 335 Gene3D - 141 215 IPR036638 GO:0046983
Amo18g0528 335 MobiDBLite consensus disorder prediction 119 134 - -
Amo18g0528 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 212 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0528 Amo-Chr18 7075315 7076751 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0528 12 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 50.000 2.34e-94 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo18g0528 HLH 1.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0528 - - aip:107612257 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0528 18 7075315 7076751 Amo18g0528 18 7075315 7076751 ECH