Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0522 ATGGTGTCCGACGCCAGCAAGAAAAAGGCCGCGCAGAAGAAGGCGGCGGCAGCGGCTAAGAGAGGAGGCAAGGCGGCTGCTTCCTCGAAGGCGTCGGCGTCAGCATCAGCCTCGGAGAAGGCAGCCGACCAGCTCGCCAACGGTGTCGGAGATATTGTTATATCGGATCGAACCTGCACCGGTGTCCTCTGCTCACATCCCCTTTCCAGGGATATTAGGATAGAGTCTCTGTCAGTTACTTTCCATGGACATGATCTGATAGTTGATTCTGAATTGGAGCTGAACTATGGAAGACGCTATGGTTTGCTCGGATTAAATGGTTGTGGAAAATCTACCTTGCTTACGGCAATAGGTATGCGAGAGCTTCCTATTCCAGAACACATGGATATATATCACCTTGCTAGGGAAATTGAAGCCTCTGACATGTCTGCGCTGGAGGCTGTAATAAGCTGTGACGAGGAGAGGTTGAGATTGGAGAAAGAAGCTGAAGCTTTAGCCTCTCAGGATGATGGGGGTGGTGAAGCACTTGACCGTATATATGAACGTTTGGAAGCCCTGGATGCATCGACTGCAGAAAAACGTGCTGCTGAAATCCTATTTGGTCTTGGTTTCAACAAGCAAATGCAGGCAAAGAAGACACGTGATTTTTCCGGGGGTTGGAGAATGAGGATTGCTCTAGCCAGAGCTTTATTCATGAACCCAACCATTCTCTTGCTTGATGAACCTACCAATCACCTCGATTTGGAAGCCTGTGTGTGGCTGGAGGAGAATCTTAAGAAGTTTGAGCGTATTCTGGTTGTGGTTTCACACTCCCAGGATTTTCTTAATGGTGTCTGCACAAATATCATACACATGCAAAGCAAAAAGCTGAAGCTCTACACTGGTAACTATGATCAGTATGTTCAGACACGTGCTGAACTTGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAGGACCAGATTGCCTCAATGAAGGAATACATTGCCCGATTTGGCCATGGGTCAGCAAAACTAGCTCGACAAGCTCAGAGTAAAGAGAAAACTCTTGCAAAAATGGAGCGGGGTGGTCTTACAGAGAAGGTGGCTAGGGACAAAGTTTTGGTATTCCGCTTTGTGGATGTGGGAAAACTTCCCCCTCCTGTCCTCCAGTTTGTTGAGGTGACATTTGGTTACACTCCTGAGACTCTCATATACAAGAACATTGACTTTGGGGTTGATTTAGACTCTAGGATTGCTCTGGTTGGACCCAATGGAGCTGGGAAGAGTACATTACTTAAGTTAATGACAGGTGAACTGGTTCCTATAGATGGCATGGTTCGACGCCATAATCATCTTCGGATTGCACAATATCACCAGCACTTGGCCGAAAAGCTAGACATGGAAATGTCAGCTCTCCAGTATATGATTAAAGAATACCCTGGAAATGAGGAAGAGAAGATGAGAGCTGCTATTGGGAAGTTTGGCCTATCAGGTAAAGCCCAGGTGATGCCCATGAAGAATCTATCTGATGGGCAGAGGAGCCGTGTGATATTTGCATGGTTAGCCTATAGGCAACCTCACTTGCTACTCTTGGATGAGCCAACCAATCATTTGGATATTGAGACAATCGACTCGTTGGCCGAGGCACTGAATGAATGGGATGGTGGCATGGTGCTTGTTAGCCATGATTTTAGGCTCATAAACCAGGTGGCCCATGAGATATGGGTGTGTGCAGACCAATGTGTCACCAGATGGGAAGGTGATATTATGGATTTCAAGCAGCATCTAAAGGCGAAAGCAGGTTTATCTGACTGA 1797 0.4697 MVSDASKKKAAQKKAAAAAKRGGKAAASSKASASASASEKAADQLANGVGDIVISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGMRELPIPEHMDIYHLAREIEASDMSALEAVISCDEERLRLEKEAEALASQDDGGGEALDRIYERLEALDASTAEKRAAEILFGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFERILVVVSHSQDFLNGVCTNIIHMQSKKLKLYTGNYDQYVQTRAELEENQMKQYKWEQDQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVARDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPETLIYKNIDFGVDLDSRIALVGPNGAGKSTLLKLMTGELVPIDGMVRRHNHLRIAQYHQHLAEKLDMEMSALQYMIKEYPGNEEEKMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQCVTRWEGDIMDFKQHLKAKAGLSD* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0522 598 PANTHER - 1 598 - -
Amo18g0522 598 MobiDBLite consensus disorder prediction 1 35 - -
Amo18g0522 598 CDD ABCF_EF-3 383 574 - -
Amo18g0522 598 ProSitePatterns ABC transporters family signature. 216 230 IPR017871 GO:0005524
Amo18g0522 598 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 383 598 IPR003439 GO:0005524
Amo18g0522 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 316 IPR027417 -
Amo18g0522 598 SMART AAA_5 408 596 IPR003593 -
Amo18g0522 598 SMART AAA_5 96 298 IPR003593 -
Amo18g0522 598 CDD ABCF_EF-3 72 289 - -
Amo18g0522 598 Pfam ABC transporter 399 530 IPR003439 GO:0005524
Amo18g0522 598 Pfam ABC transporter 90 244 IPR003439 GO:0005524
Amo18g0522 598 Coils Coil 290 310 - -
Amo18g0522 598 Pfam ABC transporter 283 361 IPR032781 -
Amo18g0522 598 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 72 312 IPR003439 GO:0005524
Amo18g0522 598 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 598 - -
Amo18g0522 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 577 IPR027417 -
Amo18g0522 598 Gene3D - 347 596 IPR027417 -
Amo18g0522 598 Gene3D - 72 336 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0522 Amo-Chr18 6843850 6847952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0522 383 573 Calmodulin-binding Proteins AT2G36910 24.887 1.09e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0522 K06185 - gmx:100785099 1061.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0522 18 6843850 6847952 Amo13g0264 13 3701104 3705387 PCT
Amo13g0264 13 3701104 3705387 Amo18g0522 18 6843850 6847952 PCT