Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0507 ATGGCAAATAGTACATGTTCTAGCTCAAGTTCAATGAATTCAAAACAGAAGCCAATAAAAGAAAAGAGTGTGAAACAATTGACATTTGAAGCTAAGGAAGTCAATGACAATGAAGAGCACGATTTGGGAACTTCACACTTAGAAACAAAGAGAATGGATGCTCGTTGGTACCGGTCTCTGTTTCGAAAACCAAAAAATGGTAAGGTTGAGGTGCCTCAAAGGGTTCAACCTGATATCTTTAGAAACGAGACAGCACAAATGCCAGAGTCAAGGAATCCATTACTGGATGAAGATTTAGTTAGGAAGGATGTTGGGCATGATGGAGAAAAATCGACTCATTCTAAGAGAAATGGAATCATGTTGGACACGGGTTCAGATCTTTCTACCACATTGGCTGATGATGATGATTGCAACCTCATCCCTTCAAGGTTGCGTGACAATATTGTAGGGACTGGTGGGTCATGTTCCAAACGGAGAAGGTTGGATTGTGATCCTGTGGTCTCATCTAACCCTTCTACAACTGAGCTTCAGGATGGAGTTGATACTGATGCAAGTGTGTTGCAAAAGGAATATCCTGTAAATTCACCAAAAGAAGTCACAAAGCACACMTGTCTAATTTGCAAGAGTGGTGGACAGCTACTGTTTTGTGGTGGAAAAGGATGCAGCGGGTGCTACCATTCTTCTTGTCTTGAGCCACCCCTGGTCGATGCCTCCATTGGAGTTTGGTATTGCCATTTCTGTGTGAGGAAGAAGATTGAACTTGGTGTATATTCTGTATCGGAGGGAGTAGAATCAATTTGGGATGTCAAAGAAGTTTTGACATCAAATTYTGATGGGTCTACTCTTGCTCRGAAAGAATATCTAGTGAAATATAAAGGCRTTGCTCATGTTCATAATCGATGGATACCRGAAAATCAGTTACTTCGTGAAGCTCCTTCACTTCTTAAAAACTTTAATATGAAAAATCAGGACCRAAGGTTGAAGCTAGAATGGAGTCTACCTWATCGTCTGCTGCAGAAGAGAGCAATAATCCATTCCACACAGCAAGATGATCACAACATTAATGATGGAGTTCAAAACTTAAACTGTTGCTACGAATGGCTTGTGAAATGGCGTGGTCTTGGTTATGAGCATGCTACATGGGAGTTGGACAATGAGTTGTTTCTTCGTTCACCTGAAGGTCAGAGGTTAATCAGAGGCTATGAAGAGTGTTTCCAGAGAGCAAAGAGAGCAGCTTCTTGCTCCAGAGTAGATAATGTGCCACAGATTGATCAACTCAAGGAGCGGCCGTCAAGTCATMTTGCATATAARTGCAAGTCGGACTCTTTCAAGTTTATTGAGTATTGGGTTCCTGTCCAGATATCTCATGTGCAGCTTGAGCAGTATTGTGCTACTTTACATTCAAATGCTTCAATTCTTCGTTCATCAGCAAAGACGGATATCGATGCCCTTCGTGACATTATTATTACGGCCCGAAAGTGTTGTATTCATCCTTCTATTGTTGATCAAACACTGAAAAGTCGACTTACTGTTGGYCTTGATGAGGCTGAATTCATCGATGTTGATATAAAAGCAAGTGGCAAGCTGCAACTACTTGATTCGATGCTCATGGAGTTGAAGGCTAAAAGCTTAAGGGGTCTGATTCTTTTTAAGTCTATTGGTGGTTCTGGGAGGGTTTCTGCAGGAGATTTTTTGGATGACTTGTTACGGATAAGATTTGGTCCAAACTCGTATGAACGGGTTGACAAAGGTCTTTTAGTGTCCAAGCAGAAAGATGCCATGAGGAAATTTAACAACAAGGATGATGGACGGTTTGTTTTTCTGTTAGATGCATGTGCCTGCCGTCCAGGCATCAGATTATCATCACTGGATACYATTATTATATTTGACAGTGATTGGAACCCAACTAATGATATAAGATCCCTTCAGAAGATAACAATTGATTCACAGCCCCAAGTGATAAAAATATTCCGCTTATATTCAGCCTTCACTGTGGAAGAAAATGCCTTGATCCTTTCAAAGCAAGATAGGATACTTGACAGCAATTTACTGAACATAAGCAGGACTACCTGCCAAATGCTGTTGATGTGGGGAGCTGWTTCCCTATTTGATGATTTGAAAATTTTCCATCACAGTGAAACTTCTGTTTTGGGTCAGAAATCTTCATCTGGGCAACAACATCTGACAGAAACAGTCCGTGAATTATCATCAGTACTATCTCAGGACGYTGAAACAAGAAACTGTTCAGTTTTATTAAAAGTCAGGCAAAATGGGTCAACATACCRGGCAGATTTTCCTTTGCCTGGTGAGATGAAAAATAAGATACTGGAGGAAGAGCTTCCCCATATTTTTTGGACAAAACTTTTTGAGGGGAAACAGTTTAAGTGGAAGTACTCTTGTAGTTCATCTCAGCGGAGCCGAAAGAGAGTAGATCTTTTTGATGGTAGTGGAGGTATATCGAAAAAGCGCCGGAAAGTGAGAAACAATCTTRTGGACCAGCCTTCTTCAAAATCTGAAGGTTYSAAGTTATCTACTGGGATCAAGACAGATAGACTTGGATTTGATGATGTCGAAYATGAGGAAACAACTAGACTGCGTGATGAGCAGAGGAGCTTATATCTTTCTYTGAAGCCAGAGATCAAAAAGCTTTGTGGTGTTCTTCTTCTCCCTGATAACGTCAGAGATATGGTTGATAATTTTCTTGAATTTGTTGTGAACAATCATCATGTCAACAGGGAGCGAGAACCAGTATCAATGTTACAGGCTTTTCAAATATCTTTGATTTGGACTGTTGCTCCATTGCTAAAGCACAAAGTTGACCACAGGGATTCTCTTTTACTTGCAAAACAGCATTTGGATTTTGTCTGTAGGAAAGAAGAGGTGGATTATATCTACTCAGTTTTACGCTGTCTGAAGGGACTTTTTTTACATCGGATGGGAAATTCAAAGGATACTGGTTCTCCAAAATCTCCYGAGTCATCAAGGAAGGTTTATTCCARTAAAGAAGTAGWRCARGAGGYTGACTTGTTTAAAAATGATGTGTTCAGAAGTATTAGGGAAATACGGAAGAAGTGCCAAGAGCAGTTGAAGAAACTTAAACGGMTGCAACAAGAAGAGAAGWAAAGATTAGAAACAGCTTTTGAGGATGAAAAGGCTGAATTTGAGAAAAAGTACAAAATAGAGTCATTGGTTATTCGGACCTGCTCTCCAAATGATGTGATGAAGACAGAGAAGCTCAAAGTCTTGAACACTGAATTTGGTTCAAAAATTGAAGAACTAAAATGTGAGCATGAAACACGTCTAAAGGCTCTTGAGGACACACATATGGCTGCTAGGCAGAACTTCAAACATAGAGAAGAYGCATGGGCACAAGATGTAGAGGATTGGGCAAAAAGTGAATTGTCAAACATAGATGCTTCAAAGGAACTTGGKACGGCAGTTGAATACACGCAGCTGTCTGATCAGGAAAATGCTCACAAGGGTTCAGAGAGTATGCCCCTTGTGTCTGATCATTTGACTGAYGAGAAGGGTCATGATAATAACACAAATGAGGCCATGCCTAATGATGTTCAGGATGAAGTTCATTCTTCTACACACAATAAACTAGATGGGACTGTTTCAAGCCTGTCTTGTGAGAATGCCGTGCAAAYYCATGGAGCTTATAATGGTTTGGATAATGCTACCACTGAAACTTCACATTTACCTAATGAAGGGATTGCTGATGRGGCCATGGCAGGCATAWTGAATAGAGATGCACCCAGAMAGCCTACCACYGTCACTGCTACTGATTGTCTGGAAAATGTTTCAGCTGATAGTCCTCCTCCATCTGTGGAGCAAGTAACTGATGGAGTTGCTTTAAATGAAATTTTAGATAGATGTGCYACCCCAGAAACTAGCCACGATCAGGGCAGAGTAAGCATATTGGGACGAGAGGTACCTGTGGAAGTGGAAACACATAGGATGGTCAATTTTAGTGAATGTCCCRTAAATGCTGCTGCTGTCAATCATTTCTCATCKGTGGATCAAACATCTGACAAAGGACCTATAAATGACCCAGATARTACTGTCTCATCATTCAGGTGTTGTCAAGCTGATGGTCCTGATAAAAGTTCCCTTTCAAATCCACCTTTGGTACAACAAKTTACTGATGTAGTCTCTTTGAATGAACCTGATGGAGATACTCATGAAGCRGCTGATTGTCATAATGATACAAGGCCTTCCACAGACACTTCTTCAGTGGATAAAAGTAGTATGATACCAGCCCAGCTGGAAGGAGTGCAGCAATCACCATCTCTGGAGGCCCCTCCTGCTCAGGATACTGCTGGAGAAGTGCAGAATTCTTCTGAAMGAGCTGARMTAGTACCTAATCTAGTTGGTGTTGTTCCAGCTAATCAATCAAATTCATGCATCCTGGAGCCTTCCGAGAATGGAGTTGAACATCAGCCGAACAGAAATGATCTCCCCCACCACGAAACAGAGGTTTCAGCTGTGGTTCCTAATCAGGATGTTGTGCAGGCTGACTCAAATTTAGAGCTTGGTTCACACTCGCAAGCAGTTGTGCACTCTGTCCTAAATTCAGGCCATGATTCACTTGGWCCSGTTGGAGTCAKAAGAGAGGCTTCAAGTTCAAGCTTGAGAAATTTGTCAACTCCTTCAGAAATCAACAATCATCCTATACATACTGCAACTCATTCAGCTTCTAGAATGCCTCTGCCGTTGAGCGCCGATCCACTTAAAAATGAATTGGAAAGAATAAAAAAAATTATTGAACAACTGACCAAAAACCATGAAGAAATGAGAKCTAAACTGAAGTCTGATTTCGAAAAGGAATTGGAGGCACTTCGTAGGAAGTATGATATTAAATTTCAATTGGTTGAGAATGAATTTCAACAAACGAAGAACARGTTGGATTCAAGTTACCACACAGTTTTGGTAAATAAGATGTTGGCAGATTTTTTTCGGTCCAAATGCATGTATCGTAAAACATCTGATGCATATGGAGTGCAGCAAGATGCAGGTGTTGCCCAGCAGTCGATTCAGCTTGCAAGACAACAAAGTGCTACTTTTCCTTCCCAGGTTGTTGCTGGTTCATCTTCCCGGGGACCACGGGGACCACTTTCTGCCAATCTTCATAGTCCATCTGCTTTGGTTAGCTCTCAGAATTCGCTCCCACCTTCAAATGTTACKTACAAGACACCAAGTCCTCCTGCAAGACTTCCTCTTAACTGCAATTCTTCACCCTCAGGGAATTTTCCGATTGCCAGTGAGATGCGAGCCCCGGCACCACATCTCCAGCCTTTTAGACCCTCGACACCTATGCTGGCTCCTAATCACCCTGCTCTCCTTCATGGGATGCCAAATCAGGCTGCACCTATTAACATACCTGCGATTGCTCCCACATTGTCTTGTGTTCCAGCCCAACCAACTCCACTGACATATCAGTCTGATCCTCAGATGGCCCACCAGCCGAATAGCTCTGTTGGAACTGGTGGGTTTTCCACCCTYAACTTACGGACCATCAGCTTACATGCGAATGCCAACACTCAATCTRCTGTTTGTCTTCCAAGAGTTCAGCCAAGTATGTCAGAAGTGGTTTCTTTGAACCCACCCAGAATTGGCACCAGTGTTARTGTGACTCCTAACTCATCCAGTCAAGCTGCATCTCTTGAATTMGTCTGTTTATCAGACGATGAGTGA 5697 0.4143 MANSTCSSSSSMNSKQKPIKEKSVKQLTFEAKEVNDNEEHDLGTSHLETKRMDARWYRSLFRKPKNGKVEVPQRVQPDIFRNETAQMPESRNPLLDEDLVRKDVGHDGEKSTHSKRNGIMLDTGSDLSTTLADDDDCNLIPSRLRDNIVGTGGSCSKRRRLDCDPVVSSNPSTTELQDGVDTDASVLQKEYPVNSPKEVTKHTCLICKSGGQLLFCGGKGCSGCYHSSCLEPPLVDASIGVWYCHFCVRKKIELGVYSVSEGVESIWDVKEVLTSNXDGSTLAXKEYLVKYKGXAHVHNRWIPENQLLREAPSLLKNFNMKNQDXRLKLEWSLPXRLLQKRAIIHSTQQDDHNINDGVQNLNCCYEWLVKWRGLGYEHATWELDNELFLRSPEGQRLIRGYEECFQRAKRAASCSRVDNVPQIDQLKERPSSHXAYKCKSDSFKFIEYWVPVQISHVQLEQYCATLHSNASILRSSAKTDIDALRDIIITARKCCIHPSIVDQTLKSRLTVGLDEAEFIDVDIKASGKLQLLDSMLMELKAKSLRGLILFKSIGGSGRVSAGDFLDDLLRIRFGPNSYERVDKGLLVSKQKDAMRKFNNKDDGRFVFLLDACACRPGIRLSSLDTIIIFDSDWNPTNDIRSLQKITIDSQPQVIKIFRLYSAFTVEENALILSKQDRILDSNLLNISRTTCQMLLMWGAXSLFDDLKIFHHSETSVLGQKSSSGQQHLTETVRELSSVLSQDXETRNCSVLLKVRQNGSTYXADFPLPGEMKNKILEEELPHIFWTKLFEGKQFKWKYSCSSSQRSRKRVDLFDGSGGISKKRRKVRNNLXDQPSSKSEGXKLSTGIKTDRLGFDDVEXEETTRLRDEQRSLYLSLKPEIKKLCGVLLLPDNVRDMVDNFLEFVVNNHHVNREREPVSMLQAFQISLIWTVAPLLKHKVDHRDSLLLAKQHLDFVCRKEEVDYIYSVLRCLKGLFLHRMGNSKDTGSPKSPESSRKVYSXKEVXQEXDLFKNDVFRSIREIRKKCQEQLKKLKRXQQEEKXRLETAFEDEKAEFEKKYKIESLVIRTCSPNDVMKTEKLKVLNTEFGSKIEELKCEHETRLKALEDTHMAARQNFKHREDAWAQDVEDWAKSELSNIDASKELGTAVEYTQLSDQENAHKGSESMPLVSDHLTDEKGHDNNTNEAMPNDVQDEVHSSTHNKLDGTVSSLSCENAVQXHGAYNGLDNATTETSHLPNEGIADXAMAGIXNRDAPRXPTTVTATDCLENVSADSPPPSVEQVTDGVALNEILDRCATPETSHDQGRVSILGREVPVEVETHRMVNFSECPXNAAAVNHFSSVDQTSDKGPINDPDXTVSSFRCCQADGPDKSSLSNPPLVQQXTDVVSLNEPDGDTHEAADCHNDTRPSTDTSSVDKSSMIPAQLEGVQQSPSLEAPPAQDTAGEVQNSSERAEXVPNLVGVVPANQSNSCILEPSENGVEHQPNRNDLPHHETEVSAVVPNQDVVQADSNLELGSHSQAVVHSVLNSGHDSLGPVGVXREASSSSLRNLSTPSEINNHPIHTATHSASRMPLPLSADPLKNELERIKKIIEQLTKNHEEMRXKLKSDFEKELEALRRKYDIKFQLVENEFQQTKNXLDSSYHTVLVNKMLADFFRSKCMYRKTSDAYGVQQDAGVAQQSIQLARQQSATFPSQVVAGSSSRGPRGPLSANLHSPSALVSSQNSLPPSNVTYKTPSPPARLPLNCNSSPSGNFPIASEMRAPAPHLQPFRPSTPMLAPNHPALLHGMPNQAAPINIPAIAPTLSCVPAQPTPLTYQSDPQMAHQPNSSVGTGGFSTLNLRTISLHANANTQSXVCLPRVQPSMSEVVSLNPPRIGTSVXVTPNSSSQAASLEXVCLSDDE* 1899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0507 1898 MobiDBLite consensus disorder prediction 1338 1452 - -
Amo18g0507 1898 ProSiteProfiles Chromo and chromo shadow domain profile. 267 330 IPR000953 -
Amo18g0507 1898 MobiDBLite consensus disorder prediction 1738 1752 - -
Amo18g0507 1898 Gene3D - 255 327 - -
Amo18g0507 1898 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 7 406 - -
Amo18g0507 1898 MobiDBLite consensus disorder prediction 1389 1403 - -
Amo18g0507 1898 Gene3D - 1575 1656 - -
Amo18g0507 1898 MobiDBLite consensus disorder prediction 1692 1756 - -
Amo18g0507 1898 SMART chromo_7 330 406 IPR000953 -
Amo18g0507 1898 SMART chromo_7 260 323 IPR000953 -
Amo18g0507 1898 MobiDBLite consensus disorder prediction 1367 1387 - -
Amo18g0507 1898 Coils Coil 1575 1600 - -
Amo18g0507 1898 CDD SF2_C_SNF 526 639 - -
Amo18g0507 1898 Coils Coil 1036 1040 - -
Amo18g0507 1898 MobiDBLite consensus disorder prediction 103 122 - -
Amo18g0507 1898 Coils Coil 1042 1053 - -
Amo18g0507 1898 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 254 IPR013083 -
Amo18g0507 1898 SUPERFAMILY Chromo domain-like 364 403 IPR016197 -
Amo18g0507 1898 MobiDBLite consensus disorder prediction 1692 1728 - -
Amo18g0507 1898 SMART PHD_3 203 248 IPR001965 -
Amo18g0507 1898 MobiDBLite consensus disorder prediction 1 17 - -
Amo18g0507 1898 ProSitePatterns Zinc finger PHD-type signature. 204 247 IPR019786 -
Amo18g0507 1898 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 531 695 IPR001650 -
Amo18g0507 1898 SUPERFAMILY FYVE/PHD zinc finger 192 251 IPR011011 -
Amo18g0507 1898 MobiDBLite consensus disorder prediction 1148 1162 - -
Amo18g0507 1898 MobiDBLite consensus disorder prediction 1808 1833 - -
Amo18g0507 1898 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 421 1860 - -
Amo18g0507 1898 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 421 1860 - -
Amo18g0507 1898 ProSiteProfiles Chromo and chromo shadow domain profile. 338 403 IPR000953 -
Amo18g0507 1898 Pfam Chromo (CHRromatin Organisation MOdifier) domain 267 319 IPR023780 -
Amo18g0507 1898 Pfam Chromo (CHRromatin Organisation MOdifier) domain 351 387 IPR023780 -
Amo18g0507 1898 SUPERFAMILY Chromo domain-like 220 324 IPR016197 -
Amo18g0507 1898 MobiDBLite consensus disorder prediction 1148 1207 - -
Amo18g0507 1898 MobiDBLite consensus disorder prediction 1467 1487 - -
Amo18g0507 1898 Coils Coil 1602 1609 - -
Amo18g0507 1898 MobiDBLite consensus disorder prediction 1404 1452 - -
Amo18g0507 1898 Gene3D - 420 445 IPR038718 -
Amo18g0507 1898 Gene3D - 335 401 - -
Amo18g0507 1898 MobiDBLite consensus disorder prediction 18 44 - -
Amo18g0507 1898 Coils Coil 1015 1034 - -
Amo18g0507 1898 MobiDBLite consensus disorder prediction 1467 1481 - -
Amo18g0507 1898 Gene3D - 446 680 IPR027417 -
Amo18g0507 1898 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 7 406 - -
Amo18g0507 1898 ProSiteProfiles Zinc finger PHD-type profile. 201 250 IPR019787 -
Amo18g0507 1898 MobiDBLite consensus disorder prediction 1 44 - -
Amo18g0507 1898 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 445 685 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0507 Amo-Chr18 6617594 6630609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0507 204 371 Core DNA Replication Machinery Family AT4G14700 27.429 9.11e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0507 - K11642 aip:107610432 3546.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0507 18 6617594 6630609 Amo13g0286 13 3972506 3981752 PCT
Amo13g0286 13 3972506 3981752 Amo18g0507 18 6617594 6630609 PCT