Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0498 ATGTCTGAGGATGTTGGTAATAATATGAAGGACTCTTGGTTTTTCGAGAAGAATTTTAATGGCCTGTCCGACGAGGCTTTTGATGATGTCTTCAGCTTTTTAGATTTCCCGTTGGAAGATGTGGAACCGAATGTTGTTGAAGAAGACTGGGATGCTCAGTTTAAACGCATTGAGCCATGTTATGATGTTTTTTCGGTGTCATCGACTGTGCTCTGTAGTGATAAAACCCAAAATGAAAAGCCACAACTTGGGGGAAGTTTCTCTGGTTCTAGTAATGAGGTTTCTCCAATAAAACAGCTGGATGAGACTGCTGGATTGGATGTTGGAAAAACCATTCTGAACCAGAATTCATCTCTCAATGGAAAAGATTTGCATCAACTTCRAACCTACAGCCCAGTTTCTGTTTTTGAAAGCAGTAGTACTTCTTCAGCTGAGAATTCCAACYTTGATCTACCTGCCATCCCGGTAAAGCGTGCTCGAAGCAAGCGCCAGCGTGCATCRAGCTTCAGTCCTCTATTTGTGATTCCTTCTGTTCCTACTTCACCGGCTTGGCAAATTTATGAAATGAAAGTTGACCCGGAATCAAATTTAGGGACACACCATGCYGRGAAATCATTAAACAACACRAAAAAACAGAGGAAAARGGATCTCCCTGTGCTTTCAGKTCACAATGACATGAAAAGATCYTCATCACAGGAGCCAGTTCCCACCAGAAAATGCATGCATTGCGAGGTGACAAAGACCCCACAGTGGAGAGAGGGACCGATGGGTCCAAAGACGCTGTGCAATGCCTGCGGTGTTCGATACAGGTCTGGTCGCCTCTTCCCCGAATAYCGRCCAGCAGCTAGCCCCACTTTTGTACCATCAGTGCATTCAAACTGTCATAAGAAGGTCATAGAGATGAGAAGCAAAGGMATCCAGGCAAGCCTTAGGAATCCATTGTCRWCGATGTCRAACCTTCATGGAAATTCTGTAGGATAA 981 0.4363 MSEDVGNNMKDSWFFEKNFNGLSDEAFDDVFSFLDFPLEDVEPNVVEEDWDAQFKRIEPCYDVFSVSSTVLCSDKTQNEKPQLGGSFSGSSNEVSPIKQLDETAGLDVGKTILNQNSSLNGKDLHQLXTYSPVSVFESSSTSSAENSNXDLPAIPVKRARSKRQRASSFSPLFVIPSVPTSPAWQIYEMKVDPESNLGTHHAXKSLNNTKKQRKXDLPVLSXHNDMKRSSSQEPVPTRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVPSVHSNCHKKVIEMRSKGIQASLRNPLSXMSNLHGNSVG* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0498 326 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 27 304 - -
Amo18g0498 326 Gene3D - 231 313 IPR013088 GO:0006355|GO:0008270
Amo18g0498 326 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 237 295 - -
Amo18g0498 326 CDD ZnF_GATA 239 286 IPR000679 GO:0006355|GO:0043565
Amo18g0498 326 PANTHER GATA TRANSCRIPTION FACTOR 27 304 - -
Amo18g0498 326 Pfam GATA zinc finger 240 273 IPR000679 GO:0006355|GO:0043565
Amo18g0498 326 ProSitePatterns GATA-type zinc finger domain. 240 265 IPR000679 GO:0006355|GO:0043565
Amo18g0498 326 ProSiteProfiles GATA-type zinc finger domain profile. 234 270 IPR000679 GO:0006355|GO:0043565
Amo18g0498 326 SMART GATA_3 234 284 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0498 Amo-Chr18 6445080 6449317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0498 16 304 C2C2-Gata Transcription Factor Family AT1G08010 41.638 6.56e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Amo18g0498 GATA 3.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0498 - - gmx:100813303 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0498 18 6445080 6449317 Amo18g0498 18 6445080 6449317 ECH
Amo18g0498 18 6445080 6449317 Amo13g0299 13 4117571 4120908 ECH
Amo18g0498 18 6445080 6449317 Amo13g0299 13 4117571 4120908 PCT
Amo13g0299 13 4117571 4120908 Amo18g0498 18 6445080 6449317 PCT