Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0497 ATGAAGGAAGCTGAGAAGAGCTTGGATCCGCAGCTATGGCATGCTTGTGCCGGTGGCATGGTTCAGATGCCTCCGGTGAACTCCAAAGTCTTCTACTTTCCACAAGGGCATGCCGAGCATGCACAAACTAACGTTGATCTGGGAGCTCCCCTGAGGGTTCCTTCCTTCATCCTCTGCCGCGTGGCGCAGGTGAAATTCCTTGCTGACCCTGAAACCGATGAAGTCTTTACAAGGATGAGCTTGGTTCCCCTGAGGAATTCAGAGCTTGATTCTGATGATGGCGGTGTCCTTGATGCCAATGCTTTGGAGAATTCAGAAAAGCCTGCTTCTTTTGCAAAGACCTTAACTCAATCCGATGCAAACAATGGTGGGGGGTTCTCTGTTCCAAGGTACTGTGCAGAAACAATCTTCCCCCGACTCGATTACTCCGCAGAGCCGCCGGTTCAGACCGTGATCGCCAAGGATGTTCATGGTGAAGTTTGGAAGTTCAGGCACATATATAGGGGCACACCGAGGAGGCACTTGCTCACAACAGGGTGGAGCAGTTTTGTCAACCAGAAGAAACTGGTTGCAGGGGATTCAATTGTGTTCCTGAGGGCCGAAAATGGTGATCTCTGTGTTGGGATTAGGCGTGCCAAGAGGGGAACAGGTGGAGGATCGGAGGCGCCATCGGGATGGAGCTCCGGGAATGGAAGTTGTGGCCTTGGCTCTTATGGAGCATTCTCTGCCTTCTTGAGAGAGGAGACCAAGCTGTTGAGGAATGGTTGTGGGAATTCGAGTCCCGGTGGTGGCGGCAGTGGTTTGAATGGAAAAGCTAAAGTAAGTCCTGAATCTGTGAGGGAGGCTATAACACTGGCTGCTAGCAATCAGCCATTTGAAGTTGTTTATTATCCAAGGGCAAGCACACCGGAGTTTTGCATCAAGGCTTCGGCTGTGAGGGCAGCAATGAGGATACAATGGAGCACTGGGATGAGGTTCAAGATGGCCTTTGAGACTGAGGATTCTTCTAGGATCAGCTGGTTCATGGGGACCATTGCTTCTGTTCAGGTTGTTGATCCTATCCGCTGGCCTAATTCCCCTTGGAGACTTCTTCAGGTTACTTGGGATGAGCCAGATTTGTTACATAATGTGAAGCGTGTAAGCCCATGGTTGGTTGAATTGGTATCAAGCATGCCAGCCATCAATCTATCGCCCTTCTCTCCGCCAAGGAAGAAACTCCGGTTTCCACAACACCCCGACTTCCCCCTCGACGTTCAATTTCCTATACCGTCGTTTTCAGGCAACCCCCTAGGGCCTCATAGCAGCCCCTTGTGTTGTCCATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTCTTTCAGATCTCTACCTTAACAACAAACTGCAGTTGGGGGTGATTCCGGCCGCGAATGTYCAGCGACTGGATTTGCATTCGGGGTTTCCCAGTGGCGGCAACTTCACTGGCCATGACAAGAGTAAAGAAAGCTTGTCATGCTTGCTAACCATGGGAAATTCTCACAATAAGAGTTTGGAGAAGTCTGATAATGTGAAGAGACACCAATTTTTGCTTTTTGGTCAACCAATACTCACTGAGCAACAAATCTCCAGAAGGCCTTCTTCTTCTGGTGGTGATGATGATGTGTTGCCTCAGAATGGTACCAAGAAAACTTCAATAGATGAGAATGAGAACAAAGACAAAGACAAAGAGAAGTGGTTTTTCAATGACTCTCAATCTCCTCTTTCACAACAATTTTCACCTGGTAAATCAAAATCATCTTGTAGCACAGAGTTATCTTGGCAAATTGGGTTGGATACTGGTCATTGCAAGGTGTTCATGGAGTCAGAAGATGTTGGAAGGACACTTGACCTGTCACGTCTTAGCTCCTATGATGAACTGTATAGGAGACTCAGCAACATGTTTGGAATCGAAAGATCTGAGTTGTTGAGTCATGTACTCTACCGTGATGCAACTGGTGCTGTCAAGCAAACSGGTGAAGAACCCTTCAGTGACTTCATGAAGACAGCAAAAAGATTGACAATTCTGACGGATCCAAGCAACAAGGATGCAAGGAGGGCATGGATTACAGGTACTCGTAATGGTGAACATGGATTGGATGCATCAAACAAGACAGGTCCTCTTAGCATATTTGCTTGA 2178 0.4798 MKEAEKSLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQTNVDLGAPLRVPSFILCRVAQVKFLADPETDEVFTRMSLVPLRNSELDSDDGGVLDANALENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGTGGGSEAPSGWSSGNGSCGLGSYGAFSAFLREETKLLRNGCGNSSPGGGGSGLNGKAKVSPESVREAITLAASNQPFEVVYYPRASTPEFCIKASAVRAAMRIQWSTGMRFKMAFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSSMPAINLSPFSPPRKKLRFPQHPDFPLDVQFPIPSFSGNPLGPHSSPLCCPSDNAPAGIQGARHAQIGISLSDLYLNNKLQLGVIPAANVQRLDLHSGFPSGGNFTGHDKSKESLSCLLTMGNSHNKSLEKSDNVKRHQFLLFGQPILTEQQISRRPSSSGGDDDVLPQNGTKKTSIDENENKDKDKEKWFFNDSQSPLSQQFSPGKSKSSCSTELSWQIGLDTGHCKVFMESEDVGRTLDLSRLSSYDELYRRLSNMFGIERSELLSHVLYRDATGAVKQTGEEPFSDFMKTAKRLTILTDPSNKDARRAWITGTRNGEHGLDASNKTGPLSIFA* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0497 725 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Amo18g0497 725 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Amo18g0497 725 Gene3D - 319 393 - -
Amo18g0497 725 Gene3D - 612 696 - -
Amo18g0497 725 Pfam Auxin response factor 282 365 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Amo18g0497 725 SMART B3_2 111 213 IPR003340 GO:0003677
Amo18g0497 725 CDD B3_DNA 110 211 IPR003340 GO:0003677
Amo18g0497 725 ProSiteProfiles PB1 domain profile. 613 693 IPR000270 GO:0005515
Amo18g0497 725 PANTHER AUXIN RESPONSE FACTOR 2 702 - -
Amo18g0497 725 Gene3D - 109 213 IPR015300 -
Amo18g0497 725 MobiDBLite consensus disorder prediction 540 564 - -
Amo18g0497 725 SUPERFAMILY DNA-binding pseudobarrel domain 104 217 IPR015300 -
Amo18g0497 725 MobiDBLite consensus disorder prediction 540 574 - -
Amo18g0497 725 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 702 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0497 Amo-Chr18 6430497 6434491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0497 5 691 B3 DNA Binding Superfamily AT4G30080 58.369 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Amo18g0497 B3 4.7e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0497 - - gmx:100778135 1093.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0497 18 6430497 6434491 Amo18g0497 18 6430497 6434491 ECH
Amo18g0497 18 6430497 6434491 Amo13g0300 13 4138673 4142405 ECH
Amo12g3364 12 122848158 122851774 Amo18g0497 18 6430497 6434491 ECH
Amo18g0497 18 6430497 6434491 Amo13g0300 13 4138673 4142405 PCT
Amo13g0300 13 4138673 4142405 Amo18g0497 18 6430497 6434491 PCT