Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0493 ATGGCTATGGCTGTGGCTCAGCATCATCATAGGGAGAGCAGCATTGACAAGCATCTTGATTCGTCAGGAAAATATGTTAGGTACACTGCTGAGCAAGTTGAAGCACTTGAAAGAGTTTACATTGAGTGCCCTAAACCTAGCTCCTTGAGGAGGCAGCAGTTGATTAGAGACTGCCCCATTCTTGCAAACATAGAGCCCAAGCAAATCAAAGTTTGGTTCCAGAACCGCAGGTGTAGAGAGAAGCAGAGGAAAGAGGCTTCACGCCTTCAGACCGTGAACCGCAAGCTTACAGCGATGAATAAGCTGTTAATGGAGGAAAATGATCGATTACAGAAGCAGGTGTCGCAGCTGGTGTGTGAGAATGGGTATATGAAGCAGCAGTTGCATACTCTTCAGCCATCAGCAGCAACCACTGATGCAAGCTGTGATCCAGTGGTTTCGAGTTCAACTACTCAGCAATCTATGAGAGATGCTAATAGTCCTGCAGGATTCCTATCAATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTTCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCTATTTCGCAAAGTTGCAGTGGGGTGGCAGCTCGAGCCTGTGGTCTTGTCAGTCTTGAACCTACAAAGATTGCAGAGATCCTAAAAGACCGTCCCTCTTGGTTTCGGGATTGCCGGAGCCTAGAGGTTTTCACAATGTTTCCCGCTGGAAATGGAGGCACAATTGAACTTGTTTACACCCAGACATATGCTCCTACCACACTGGCTCCTGCCCGGGATTTCTGGACTCTTAGATACACTACAACTCTGGAAAATGGCAGTCTTGTGGTTTGTGAGAGGTCACTATCTGGTTCTGGGACTGGGCCTAATGCAGCTGCTGCTGCCCAGTTTGTGAGGGCTGAAATGCGGCCTAGTGGCTACTTGATTCGACCGTGTGAAGGTGGAGGATCAATCATTCACATTGTAGACCACCTAAACCTTGAGGCATGGAGTGTGCCAGAAGTGCTGCGACCACTATATGAATCATCAAAAGTGGTAGCTCAGAAAATGACAATTGCGGCGCTACGTTATATCAGGCAAATAGCCCAAGAAACAAGCGGTGAAGTGGTTTATGGCCTGGGTAGGCAACCTGCCGTTCTGAGAACTTTCAGTCAAAGGTTGAGCAGAGGTTTCAATGATGCTGTCAATGGTTTCAATGACGATGGCTGGTCTGTACTGAACTGTGATGGTGCCGAGGATGTAATTATTGCAGTTAGTTCAACCAAGAACTTTAGTGGAACTTCTAATCCAGCAAGTTCCCTTACATTCCTTGGAGGAATTCTGTGTGCAAAAGCTTCTATGTTACTCCAAAACATCCCTCCTGCAGTTTTGGTTCGTTTCCTGAGGGAACATCGCTCGGAGTGGGCTGATTTTAATGTCGATGCCTATTCTGCTGCATCACTGAAATCTGGCTCATATGCCTATCCAGGAATGAGGCCTACAAGATTCACTGGCAATCAAACAATCATGTCCCTTGGACATACAATTGAACATCAAGAGATGCTGGAAGTTATCCGTCTTGAAGGACACTCTCTTGCTCAAGAAGATGCATTTGCCTCTAGGGACGTTCATCTCTTGCAGTTATGTAGTGGAATTGACGAGAATGCCGTGGGGGCTTGTTCTGAGCTCATATTTGCTCCTATTGATGAAATGTTCCCAGATGATGCTCCATTGTTGCCTTCCGGTTTCCGCATTATCCCGTTGGATTCAAAACCAGGTGATAAAAAGGATTCAATGACAGGAAGTCAAACCCTGGATTTGACATCTGGTTTTGAAGTTGGCCCAACAACAAATGGTGCACGCGATGCGGTATCATGTCATAGTGCACGGTCGGTGTTGACTATTGCCTTCCAGTTTCCTTTTGACAGTAGTCTGCAGGATAATGTTGCTATCATGGCACGCCAGTACATCCGTAGTGTGATTTCCTCTGTGCAGAGGGTTGCCATGGCGATTTCTCCATCTGGTATAAACCCGGCAGTTGGCTCAAAACTCTCTCCTGGTTCTCCAGAGGCTCTTACACTAGCCAACTGGATCTGCTGCAGTTATAGTTATTATTTGGGGGCAGAGCTGCTGAGATCTGATTCTCTCATTGGTGAGTCGGTGCTTAAACATTTGTGGCATCATCAGGATGCCATTTTGTGCTGTTCTTTGAAGTCGGTGCCGGTGTTCATCTTTGCAAACCAGGCCGGCCTTGACATGTTGGAAACAACTTTGGTGGCTTTACAAGACATCACATTGGATAAAATATTTGATGAGTCTGGACGCAAGGCATTGTTTGCAGATTTTGCCAAGTTAATGCAGCAGGGGTTTGCATATCTGCCGGCCGGAATTTGCATGTCAACGATGGGGCGACACGTATCATTCGAGCAGGCCATTGCATGGAAAGTACTTGCAGAAGAAGATAACAGTGTTCATTGCTTAGCTTTCTCTTTCGTGAATTGGTCATTTGTATGA 2538 0.4673 MAMAVAQHHHRESSIDKHLDSSGKYVRYTAEQVEALERVYIECPKPSSLRRQQLIRDCPILANIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLHTLQPSAATTDASCDPVVSSSTTQQSMRDANSPAGFLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQTYAPTTLAPARDFWTLRYTTTLENGSLVVCERSLSGSGTGPNAAAAAQFVRAEMRPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSVLNCDGAEDVIIAVSSTKNFSGTSNPASSLTFLGGILCAKASMLLQNIPPAVLVRFLREHRSEWADFNVDAYSAASLKSGSYAYPGMRPTRFTGNQTIMSLGHTIEHQEMLEVIRLEGHSLAQEDAFASRDVHLLQLCSGIDENAVGACSELIFAPIDEMFPDDAPLLPSGFRIIPLDSKPGDKKDSMTGSQTLDLTSGFEVGPTTNGARDAVSCHSARSVLTIAFQFPFDSSLQDNVAIMARQYIRSVISSVQRVAMAISPSGINPAVGSKLSPGSPEALTLANWICCSYSYYLGAELLRSDSLIGESVLKHLWHHQDAILCCSLKSVPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALFADFAKLMQQGFAYLPAGICMSTMGRHVSFEQAIAWKVLAEEDNSVHCLAFSFVNWSFV* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0493 845 SUPERFAMILY Bet v1-like 166 378 - -
Amo18g0493 845 Pfam START domain 167 374 IPR002913 GO:0008289
Amo18g0493 845 Pfam MEKHLA domain 701 844 IPR013978 -
Amo18g0493 845 Gene3D - 17 90 - -
Amo18g0493 845 ProSiteProfiles 'Homeobox' domain profile. 19 83 IPR001356 GO:0003677
Amo18g0493 845 Gene3D - 201 383 IPR023393 -
Amo18g0493 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 845 IPR044830 GO:0003700
Amo18g0493 845 ProSiteProfiles START domain profile. 157 385 IPR002913 GO:0008289
Amo18g0493 845 MobiDBLite consensus disorder prediction 605 619 - -
Amo18g0493 845 CDD homeodomain 24 84 IPR001356 GO:0003677
Amo18g0493 845 SMART START_1 166 376 IPR002913 GO:0008289
Amo18g0493 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 845 - -
Amo18g0493 845 MobiDBLite consensus disorder prediction 598 619 - -
Amo18g0493 845 MobiDBLite consensus disorder prediction 138 157 - -
Amo18g0493 845 Pfam Homeodomain 24 82 IPR001356 GO:0003677
Amo18g0493 845 Coils Coil 93 120 - -
Amo18g0493 845 CDD bZIP 76 115 - -
Amo18g0493 845 SMART HOX_1 21 87 IPR001356 GO:0003677
Amo18g0493 845 CDD START_ArGLABRA2_like 161 377 - -
Amo18g0493 845 SUPERFAMILY Homeodomain-like 19 86 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0493 Amo-Chr18 6374444 6380213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0493 1 845 Homeobox Transcription Factor Family AT5G60690 81.455 0.0 1431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo18g0493 START 5.5e-48 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0493 K09338 - gmx:100804870 1519.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0493 18 6374444 6380213 Amo18g0493 18 6374444 6380213 ECH
Amo18g0493 18 6374444 6380213 Amo13g0306 13 4177856 4184390 ECH