Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0486 ATGACGAAGGATGTTGAGGTAGCAGAGCAAGGGCAAGGAGGAGAGTACAGTGCAAAAGACTATAATGACCCTCCACCGGCGCCATTGATAGACTTTGAGGAGCTGAAAAAGTGGTCTTTGTACAGAGCAGTGATTGCTGAGTTCGTAGCAACGCTTCTATTCCTTTATATAACGGTTTTGACCATCATAGGTTACAAGCACCAGACGGACCCAAACCTTGCTGGTACCAATCAGTGTGACGGCGTTGGAATCTTGGGTATTGCATGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCTGGAATCTCTGGTGGACATATCAACCCGGCGGTGACATTCGGGTTGTTCGTGGGGCAGAAACTGTCACTAATAAGGACACTGCTGTACATGATTGGGCAATGCGCCGGTGCCATCTGCGGTGCCGGACTTGCCAAGGGGTTTCAGAAATCGTTCTACAACAGATACGGTGGTGGTGCCAACACCGTCAGCCACGGGTATAACAAAGGCACTGCTCTAGGTGCTGAGATTATCGGCACCTTCGTCCTTGTGTACACCGTGTTCTCTGCCACTGATCCGAAGAGGAACGCCAGGGACTCCCATGTTCCAGTGTTGGCACCACTCCCCATTGGATTCGCCGTCTTCATGGTTCACTTGGCCACTATCCCTATCACTGGTACTGGAATTAACCCTGCAAGGAGTTTTGGACCCGCTGTTATCTTCAACAATGATGAAGCTTGGGATGACCAGCAGCAGCAGCAATCTACCACCAACACATTCTTAGAGCAGCAGCAATCAAAGCTCTTGGATCCTTCAGGAGCAACGCTTAATCAAAATCACACCTTAGTTTACTATTTCTCAGACACATCTTTAACTTCAATAATTATTATGGCTTAA 903 0.4862 MTKDVEVAEQGQGGEYSAKDYNDPPPAPLIDFEELKKWSLYRAVIAEFVATLLFLYITVLTIIGYKHQTDPNLAGTNQCDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFVGQKLSLIRTLLYMIGQCAGAICGAGLAKGFQKSFYNRYGGGANTVSHGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGPAVIFNNDEAWDDQQQQQSTTNTFLEQQQSKLLDPSGATLNQNHTLVYYFSDTSLTSIIIMA* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0486 300 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 253 IPR034294 -
Amo18g0486 300 TIGRFAM MIP: MIP family channel proteins 46 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo18g0486 300 ProSitePatterns MIP family signature. 109 117 IPR022357 -
Amo18g0486 300 CDD MIP 42 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo18g0486 300 Pfam Major intrinsic protein 34 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo18g0486 300 PRINTS Major intrinsic protein family signature 42 61 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo18g0486 300 PRINTS Major intrinsic protein family signature 177 195 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo18g0486 300 PRINTS Major intrinsic protein family signature 91 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo18g0486 300 PRINTS Major intrinsic protein family signature 213 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo18g0486 300 PRINTS Major intrinsic protein family signature 128 147 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo18g0486 300 MobiDBLite consensus disorder prediction 1 22 - -
Amo18g0486 300 Gene3D Glycerol uptake facilitator protein. 27 256 IPR023271 -
Amo18g0486 300 PANTHER AQUAPORIN PIP2-7 1 253 - -
Amo18g0486 300 SUPERFAMILY Aquaporin-like 33 245 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0486 Amo-Chr18 6294696 6296902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0486 1 252 Major Intrinsic Protein MIP AT5G60660 76.587 2.36e-144 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0486 K09872 - gmx:732581 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0486 18 6294696 6296902 Amo13g0310 13 4245159 4247461 PCT
Amo13g0310 13 4245159 4247461 Amo18g0486 18 6294696 6296902 PCT