Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0480 ATGACTATTCAGAAGAAACATGATGCTGCTGCAGAAACTCTTTCATGCAAACGAACACTTTCACTTCCACTTCACGGGTTTGATGATTCAATGGGGTTGAATGAAGAAACCACAGATGTTCATGATTGGAAAGAACAGAATCTTGTGGCGGATATAGCATCATCAAGAACATGTTCATCATCAGAAGATGCAAAATCTCAGGATTATGTAGCCATAAAGATGCCATTGACACCAAGTCCAACTCCAACTCATAAGAGAGTCAATTTTCTTGTGACTTCTCGTTCTGTTGATGCCCCAATAAATACTACTTCTTCTTCTTCTTCATCATCTTCTTCAGGACCCTCATCTAGAACTAAATCATCATCATCATCATCATCATCATCATCCATAAGAAACATATTGCCAAAATTCACCTTAAGGAATCATAGGACACCGAATTCGGATATCGAAAAGGCTAATATTTTAGCTCCAGAATGTTCCTCTTTAGATCATCATCAAGAGAAAGACAAGTCTTCTTCAATCTCAAGATCGGTGTCCCTCACTAAGATGTTCACAACTAAGATCAAGAGAACTTCATCATTACCTGTAGAAGAATTGGGTCATGCAAACACAGATTCTGTTCAGGCTGCAATTCTTGGTGGTTCTCCATGTAGGGTAGAGACTCAGGGGATGATAGCTCGGTCTCGTTCAGTACCTATCAATACCAAAGAAAAAGGCCATAGGAGAATGGATTCATTCTTCCGTGTTGTTCCTTCCACTCCTCTATTAAAAGAAGGGAATGATTGGTTAACCAAGTACACAACAAAAGATACTGAAAATGGAGATGATGATGATGATGATGATGATGGAGAAGATATAGCTGAAGAAGAAGCTGTGTGCAGAATATGTCTGATTGATCTGTGTGAAGGAGGGGAGACACTGAAGATGGAATGCAGCTGCAAAGGTGAACTTGCTCTTGCTCACAAAGACTGTGCCATTAAATGGTTCACTATCAAGGGCAACAAGACCTGTGATGTTTGTAAGGAGGAGGTTAGGAACCTTTCTGTCACCCTCTTACGCATTCGAAATGTTCAAACTCAGAATAATCCTGGAGCAAGCTCTCAGCACCATGATGATTACAGGTTTTGGCAGGAACTGCCAGTGCTTGTGATTGTGAGCATGCTTGCCTATTTCTGTTTCCTTGAACAGTTATTGGTTGGTGAAATGGGGCACAATGCAATTTCCATATCTCTTCCATTTTCTTGTGTATTAGGCCTACTGTCTGCCATGACATCAACCACCATGGTGAAGAGCAAGTTCACATGGGTTTATGCATCTGTCCAATTAGTTCTGGTGGCTCTCTTTGCACACATATTTTACTCCCTGAATGGTCAATTTCAGGTTACCAAGAGAGCAATTCTGTCAATAATTCTTGCAACATTTGCTGGGTTTAGTGTGGTGATGAGTGGAAGTTCAATTATTGGTGAGATTCTTAGATGGAGGAGAACTTGGCAGCAGCAACAACAACAACAACAACAACAACAAAGTGGAGGAGTGCAAAATCAACACAACTCAAATCACACCTGA 1566 0.4068 MTIQKKHDAAAETLSCKRTLSLPLHGFDDSMGLNEETTDVHDWKEQNLVADIASSRTCSSSEDAKSQDYVAIKMPLTPSPTPTHKRVNFLVTSRSVDAPINTTSSSSSSSSSGPSSRTKSSSSSSSSSSIRNILPKFTLRNHRTPNSDIEKANILAPECSSLDHHQEKDKSSSISRSVSLTKMFTTKIKRTSSLPVEELGHANTDSVQAAILGGSPCRVETQGMIARSRSVPINTKEKGHRRMDSFFRVVPSTPLLKEGNDWLTKYTTKDTENGDDDDDDDDGEDIAEEEAVCRICLIDLCEGGETLKMECSCKGELALAHKDCAIKWFTIKGNKTCDVCKEEVRNLSVTLLRIRNVQTQNNPGASSQHHDDYRFWQELPVLVIVSMLAYFCFLEQLLVGEMGHNAISISLPFSCVLGLLSAMTSTTMVKSKFTWVYASVQLVLVALFAHIFYSLNGQFQVTKRAILSIILATFAGFSVVMSGSSIIGEILRWRRTWQQQQQQQQQQQSGGVQNQHNSNHT* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0480 521 SUPERFAMILY RING/U-box 289 344 - -
Amo18g0480 521 PANTHER OS02G0165000 PROTEIN 36 516 - -
Amo18g0480 521 SMART ringv_2 292 341 IPR011016 GO:0008270
Amo18g0480 521 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 36 516 - -
Amo18g0480 521 Pfam RING-variant domain 293 340 IPR011016 GO:0008270
Amo18g0480 521 ProSiteProfiles Zinc finger RING-CH-type profile. 285 347 IPR011016 GO:0008270
Amo18g0480 521 MobiDBLite consensus disorder prediction 98 130 - -
Amo18g0480 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 350 IPR013083 -
Amo18g0480 521 CDD RING_CH-C4HC3_MARCH 293 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0480 Amo-Chr18 6254822 6257740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0480 279 348 C3H Transcription Factor Family AT2G37950 46.479 5.01e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0480 - - gmx:100815599 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0480 18 6254822 6257740 Amo13g0321 13 4339237 4343451 PCT
Amo13g0321 13 4339237 4343451 Amo18g0480 18 6254822 6257740 PCT