Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0472 ATGCCGCCTAAGTTCGACCCTTCGCAGGTCGTCGATGTCTACGTCCGAGTCACCGGCGGTGAGGTTGGCGCGGCGAGTTCGCTCGCTCCTAAGATCGGTCCGCTAGGTCTCTCTCCGAAGAAGATCGGAGAAGACATTGCTAAGGAGACAGCAAAGGACTGGAAGGGACTGAGAGTGACGGTGAAGCTCACCGTGCAGAACCGTCAGGCTAAGGTCTCGGTGGTTCCGTCGGCGGCGGCGCTGGTCATCAAGGCTTTGAAGGAGCCGGAGAGAGACCGGAAGAAGACGAAGAATATTAAGCACAACGGGAACATCTCGCTGGATGACGTCATCGAAATTGCAAGGGTTATGCGGCCAAGGTCGATGGCGAAGGAGCTGAGCGGCACCGTTAAGGAGATTCTTGGCACGTGCGTCTCCGTCGGGTGCACCGTCGACGGGAAGGATCCAAAGGATTTGCAGGAGGAGATCACGGACGGAGATGTTGAGATCCCTCTCGATTGA 501 0.5729 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPRSMAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEITDGDVEIPLD* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0472 166 PANTHER 60S RIBOSOMAL PROTEIN L12 1 165 IPR000911 GO:0003735|GO:0005840|GO:0006412
Amo18g0472 166 Gene3D - 82 164 IPR036769 -
Amo18g0472 166 Pfam Ribosomal protein L11, N-terminal domain 13 69 IPR020784 -
Amo18g0472 166 SUPERFAMILY Ribosomal protein L11, C-terminal domain 76 149 IPR036769 -
Amo18g0472 166 Pfam Ribosomal protein L11, RNA binding domain 75 144 IPR020783 GO:0003735|GO:0005840|GO:0006412
Amo18g0472 166 PANTHER 60S RIBOSOMAL PROTEIN L12 1 165 - -
Amo18g0472 166 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 87 IPR036796 -
Amo18g0472 166 Gene3D - 1 81 IPR036796 -
Amo18g0472 166 SMART rl11c 13 145 IPR000911 GO:0003735|GO:0005840|GO:0006412
Amo18g0472 166 MobiDBLite consensus disorder prediction 147 166 - -
Amo18g0472 166 Hamap 50S ribosomal protein L11 [rplK]. 9 146 IPR000911 GO:0003735|GO:0005840|GO:0006412
Amo18g0472 166 ProSitePatterns Ribosomal protein L11 signature. 131 146 IPR020785 GO:0003735|GO:0005840|GO:0006412
Amo18g0472 166 CDD Ribosomal_L11 13 144 IPR000911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0472 Amo-Chr18 6145335 6146344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0472 1 164 Cytoplasmic Ribosomal Protein Gene Family AT5G60670 91.463 4.80e-109 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0472 K02870 - egr:104435631 323.168