Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0456 ATGGAAGAAGGAGGAGGAGATCAACATGCCTCTAACAGCAGCTACACTTTTCCACCAGGTTTCAGATTCCACCCTTCTGATGAAGAACTCATAGTTCATTACCTACAAAACAGAATCAGCTCTCGTCCACTTCCAGCTTCCATTATAGCTGAGATTGATCTTTATAAGTATAACCCTTGGGATTTGCCAAAGAAGGCTTTGTTTGGAGAGGAAGAATGGTACTTCTTTAGCCCGAGAGATCGCAAGTATCCAAATGGATTGAGGCCAAACAGGGCAGCAGGTTCAGGGTACTGGAAGGCTACCGGAACTGACAAGCCGATTCTCACTTCTTATGGATCGAAGCGCATCGGAGTGAAGAAAGCTCTTGTCTTCTATTTAGGTAGACCTCCAAAGGGGACTAAAACTGATTGGATCATGAATGAGTATAGATTGGTTGACACAATCACCAGCCCCTCCAGGCTCAAAGGTTCCATGCGCTTAGATGACTGGGTACTCTGTCGCGTTCGACACAAAGGCTACTCATCGAAGAACTCATGTGAGAATCAAGATAATCCTTGTGAACCAAACATGCTACCAAATCTGCCAAGGTGTGATGAAGGTTATCCAGCAACAAACATGAACTTTCATGCTGATATGATCACTGATTATCAATACAAAGACTATCAGATCCTAGCTTCTATTCTTGTTGGTGGCCATGTTCCTACCACTGAGAGCATGTCAAGTTTGAACTTGAAGGATGGCAAAGGCAATGATCCAATAACTTCAGTTCATGAAGATGGTTTCCACAGAGAAGATTCTTCTACAACAGTTTCTCCTTTGGACTGTTACTTCAACTCACTGAAAAGAAAATCTAATGAGGATAACCAATATGAGAATCTCATTTCCTTTAACAGGAAGTTGAACATGGAGACCGCAATGGATGATGAATCTTCTATCATTAATGGAGGTTTGAACTTCTACAATCAAAACCAGTCTCAAGATGACATAATATTCAATAAGAGAGCAGCAGAGCCTAGCATCAACTTTCAAGAGCTAAAGCAATCAGCTTTTATAGGAAGATACCCACAATGCTCAAGTGATTGA 1083 0.4174 MEEGGGDQHASNSSYTFPPGFRFHPSDEELIVHYLQNRISSRPLPASIIAEIDLYKYNPWDLPKKALFGEEEWYFFSPRDRKYPNGLRPNRAAGSGYWKATGTDKPILTSYGSKRIGVKKALVFYLGRPPKGTKTDWIMNEYRLVDTITSPSRLKGSMRLDDWVLCRVRHKGYSSKNSCENQDNPCEPNMLPNLPRCDEGYPATNMNFHADMITDYQYKDYQILASILVGGHVPTTESMSSLNLKDGKGNDPITSVHEDGFHREDSSTTVSPLDCYFNSLKRKSNEDNQYENLISFNRKLNMETAMDDESSIINGGLNFYNQNQSQDDIIFNKRAAEPSINFQELKQSAFIGRYPQCSSD* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0456 360 Pfam No apical meristem (NAM) protein 18 144 IPR003441 GO:0003677|GO:0006355
Amo18g0456 360 Gene3D NAC domain 26 174 IPR036093 GO:0003677|GO:0006355
Amo18g0456 360 PANTHER NAC TRANSCRIPTION FACTOR 56 13 313 - -
Amo18g0456 360 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 13 313 - -
Amo18g0456 360 SUPERFAMILY NAC domain 11 171 IPR036093 GO:0003677|GO:0006355
Amo18g0456 360 ProSiteProfiles NAC domain profile. 17 171 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0456 Amo-Chr18 6004972 6006574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0456 3 180 NAC Transcription Factor Family AT1G61110 64.516 1.32e-79 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo18g0456 NAM 1.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0456 - - gmx:100817193 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0456 18 6004972 6006574 Amo18g0456 18 6004972 6006574 ECH
Amo18g0456 18 6004972 6006574 Amo08g1093 08 18440250 18441579 hybridization