Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0443 ATGGAGGCAAGTGACACAAATACCCCTATTTCTTCTTCTCAGTCTCCAACATCCTCATCTTCTCTTCCACCTCCGCCGCAGCCTACAGCAGCGCAAGTGATAATGAGCCCTTGCGCTGCTTGTAAAATTCTTCGGCGGAGGTGTGCGGAGAAATGTGTGTTGGCCCCTTATTTTCCTCCAACTGAACCTGCCAAGTTCACCACCGCTCATAGAGTCTTTGGAGCCAGCAACATCATCAAGTTCTTGCAGGAACTTCCGGAGAGTCAAAGAGCTGATGCAGTAACAAGCATGGTTTATGAAGCAGGTGCAAGGATAAGAGATCCGGTCTACGGTTGCGCCGGCGCCATTTGCCAGCTTCAGACGCAAGTGAATGAGCTTCAAGCACAGTTAGCCAAGGCTCAAGCTGAGATTGCCAACATGCAGTTTCAACAGGCCAATATGGTGGCTCTTCTTTACATGCAAATGGCGGAGGCTAATAAGGCTACCGCCACCACACAAGAACCGCCACCGTCACCGCAACAATCCGTGGATAACTTCATTGCAAGCCCTCCTCACATCAACAATAATCTCAACTTCTTTGACGACAACACTAGCCTCAACTCCATGTGGGAGCTTTTTGGACATGACCATATCACTACGTTTTAA 645 0.4915 MEASDTNTPISSSQSPTSSSSLPPPPQPTAAQVIMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTTAHRVFGASNIIKFLQELPESQRADAVTSMVYEAGARIRDPVYGCAGAICQLQTQVNELQAQLAKAQAEIANMQFQQANMVALLYMQMAEANKATATTQEPPPSPQQSVDNFIASPPHINNNLNFFDDNTSLNSMWELFGHDHITTF* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0443 214 Pfam Lateral organ boundaries (LOB) domain 37 134 IPR004883 -
Amo18g0443 214 ProSiteProfiles LOB domain profile. 36 137 IPR004883 -
Amo18g0443 214 MobiDBLite consensus disorder prediction 161 180 - -
Amo18g0443 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 18 205 - -
Amo18g0443 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 18 205 - -
Amo18g0443 214 Coils Coil 116 143 - -
Amo18g0443 214 MobiDBLite consensus disorder prediction 1 18 - -
Amo18g0443 214 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0443 Amo-Chr18 5878961 5880171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0443 2 195 AS2 family AT2G28500 59.694 5.86e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo18g0443 LOB 5.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0443 - - gmx:100789504 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0443 18 5878961 5880171 Amo18g0443 18 5878961 5880171 ECH
Amo18g0443 18 5878961 5880171 Amo13g0343 13 4627531 4629721 ECH
Amo18g0443 18 5878961 5880171 Amo08g1085 08 18264537 18266331 hybridization
Amo18g0443 18 5878961 5880171 Amo13g0343 13 4627531 4629721 PCT
Amo13g0343 13 4627531 4629721 Amo18g0443 18 5878961 5880171 PCT