Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0439 ATGAGCTCCTCAAACAAGAACACCATTAAGAATGGTGATACCCATAATTCCCTTCAGCTAGAATTGGGGTCACCAGTGCAGCCAAGTCCAATATGGAAGCTGATGGCGGTGGCCTCCATTGCCGCCGGTATCCAGTTTGGCTGGGCTCTACAGCTCTCCCTCCTAACACCCTACAGTCAGCTTCTTGGAGTACCTCACCAATGGTCCTCTTTCATCTGGCTTTGTGGCCCCATTTCCGGCATGGTTGTCCAACCCATAGTCGGTTACTATAGCGATAGATGTACCTCCAAACTCGGCCGCCGTCGTCCTTTCATCCTTGCCGGCGCCGCTGCCGTTGCCATAGCTGTTTTTCTCATTGGCTTTGCCGCCGACATTGGCCACGCCTTAGGGGACAATCTGACCAAGAAAACCCGGCCACGCGCCGTAGGTATTTTTGTGATCGGGTTTTGGATCTTGGATGTGGCGAACAACATGCTTCAGGGCCCCTGCCGAGCATTCCTCGGTGACCTTGCTGCCGGTGACGAACGGAAGACGAGACTTGCAAACGCATTCTTCTCCTTCTTCATGGCGGTGGGAAGCGTACTGGGTTACGGCGCGGGGTCCATTGACAGCCTCCACAAAGTGTTCCCATTCACACAAACAAAAGCATGCGACGTGTTCTGCGCAGACCTGAAAACCTGCTTCTTCTTCTCGATCCTTCTGCTGCTGTCGTTGACAGGGTTGGCTTTATTCTACGTTCCAGACAAACAGGTATTACGTGAGAAGTCCGGAGAAGAGGAAGATGAAAGATCGGCCGCGGTTGTATGTTTTGGAGAAATGTTAGGGGCTTTGAAGGGGCTGAAGAAGCCCATGTTACTACTGATGGCAGTTACGGCAATAAACTGGTCAGCGTGGTTCGCATACTTCTTGTACAACACTGATTGGATGGGTAAAGAGGTATACGGTGGGACGGTTGGGAATCAAGCGTACAAAGACGGTGTCCAGAAGGGAGCTTTGGGTCTTTTGATAAACTCCGTGGTTTTGGGTGTTATGTCTTTGGGTGTGGAACCCATTGGACGTGCGGTTGGTGGCGCCAAAAACCTCTGGGGAATTGTCAATTTAATCCTTGCCGCTGGTTTAGCCATGACTGTTTATATTAGCAAAGTAGCTATGCACCAGCGCCATGTTAACCCCAACTATATTGGTCATCCCTCCACAGGCGTCCAAGCCGGAGCCTTGTCTTTTTTTGCTGTTCTTGGCATTCCTCTTGCGATAACATTTAGTGTTCCGTTTGCATTAGCATCTATTTACTCAAGTGAGACTGGTGCAGGACAAGGTTTATCTCTGGGAGTTCTCAATCTTGCAATTGTGGTTCCACAAATGATAGTGGCAGCAATTAGTGGGCCATGGGATAAATTATTTGGAGGCGGTAATTTGCCGGCGTTCGTGGCAGGTGCAGTGGCAGCTGCCGTAAGTGGAATAATGGCAATTTTCATGCTGCCTTCTACAAAACAATCAGAAGCGGCTAAAGCTGCTCTCCCCATCGGTGGTTTCCATTAG 1539 0.5023 MSSSNKNTIKNGDTHNSLQLELGSPVQPSPIWKLMAVASIAAGIQFGWALQLSLLTPYSQLLGVPHQWSSFIWLCGPISGMVVQPIVGYYSDRCTSKLGRRRPFILAGAAAVAIAVFLIGFAADIGHALGDNLTKKTRPRAVGIFVIGFWILDVANNMLQGPCRAFLGDLAAGDERKTRLANAFFSFFMAVGSVLGYGAGSIDSLHKVFPFTQTKACDVFCADLKTCFFFSILLLLSLTGLALFYVPDKQVLREKSGEEEDERSAAVVCFGEMLGALKGLKKPMLLLMAVTAINWSAWFAYFLYNTDWMGKEVYGGTVGNQAYKDGVQKGALGLLINSVVLGVMSLGVEPIGRAVGGAKNLWGIVNLILAAGLAMTVYISKVAMHQRHVNPNYIGHPSTGVQAGALSFFAVLGIPLAITFSVPFALASIYSSETGAGQGLSLGVLNLAIVVPQMIVAAISGPWDKLFGGGNLPAFVAGAVAAAVSGIMAIFMLPSTKQSEAAKAALPIGGFH* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0439 512 PANTHER SUGAR TRANSPORTER 15 500 - -
Amo18g0439 512 Pfam MFS/sugar transport protein 39 302 - -
Amo18g0439 512 SUPERFAMILY MFS general substrate transporter 34 499 IPR036259 -
Amo18g0439 512 TIGRFAM GPH_sucrose: sucrose/H+ symporter 30 498 IPR005989 GO:0005887|GO:0008515|GO:0015770
Amo18g0439 512 CDD MFS_SLC45_SUC 34 491 - -
Amo18g0439 512 Gene3D MFS general substrate transporter like domains 27 502 IPR036259 -
Amo18g0439 512 PANTHER SUCROSE TRANSPORT PROTEIN SUC7-RELATED 15 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0439 Amo-Chr18 5813336 5815915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0439 14 512 Sucrose Transporter Gene Family AT1G71880 64.892 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0439 K15378 - gmx:100784153 681.789