Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0437 ATGTTTCTCGATAAAATGGAGAAGTTCCTCGACAACTTGACGCCGATGGATCTGATGCGATCGGAGAAGATGACCTTCGTCCAGCTCATCATCCCCGCCGAGTCCGCTCACCGAGCCATCTCCTACCTCGGCGAACTCGGACTCCTCCAATTCCGCGACTTAAATGCTGATAAAAGCCCTTTCCAAAGAACGTTTGTTAATCAGGTAAAGCGATGTGCGGAAATGTCACGGAAGCTACGATTCTTCAAGGATCAAATCAATAAAGCTGGCATAATGTCTTCTTCTCATACTGCATTGCAACCAGAGATTGACTTGGAGGATTTAGAGATACAACTTGCTGAGCATGAACATGAGCTAATTGAAATGAATTCCAACAGTGACAAACTTCGGCAATCATATAATGAACTCCTCGAATTCAAGATTGTATTGCAGAAGGCATGTGGTTTTCTTGTTTCAAGTCATGGCCGTGCTATTCCTGACGAGAGAGAACTACAAGAGAATGTATACTCAAATGACTTTGTTGAAACAACATCTTTGCTTGAACAGGAAATAAGACCTGGACCATCAAATCCGTCTGGTTTAAGATTTATCAGTGGGATAATTTGTAAATCCAAGCTACTTCGGTTTGAAAGGATGTTGTTTCGTGCTACAAGAGGCAATATGCTTTTCAATCAGGCACCAGCTGACGACCAAATCATGGATCCTGTTTCAGCTGAAATGATTGAGAAAACAGTGTTCGTCGTGTTTTTCTCTGGGGAGCAGGCAAGAACTAAGATTCTGAAAATTTGTGAGGCATTTGGGGCAAATTGTTATCCTGTTCCAGAAGATATAAGCAAACAGAGGCAAATAACTAGAGAGGTTTCGTCGCGCCTTACTGACTTGGAGGCAACTTTGGATGCGGGGTTGAGGCACCGCAATAAGGCTCTAGCTTCTGTAGGGGAACATCTATCAGACTGGATGAACATGGTAAGAAGAGAGAAGGCCGTGTATGATACACTGAACATGTTAAATTTTGATGTCACAAAAAAGTGTCTTGTTGGAGAGGGATGGTGCCCTATATTTGCAAAAACACAGATTCAGGAGGCATTGCAACGGGCAACTTTTGATAGCAGTTCACAAGTAGGCATAATCTGCCATCCAATGGATGCAGTGGAATCACCACCTACATATTTTAGGACCAACAGTTTCACAAGTCCATATCAGGAGATTGTTGATGCATATGGTGTTGCGAGATACCAAGAAGCAAATCCTGCTGTTTACACAACTATTGTATTCCCCTTCCTATTTGCTGTGATGTTTGGGGATTGGGGTCATGGAATTTGCCTGTTGCTGGGAGCATTGATTCTTATAGCGCGCGAAAGCAAGCTCAGTACCCAGAAGCTTGGAAGTTTTATGGAGATGCTATTTGGTGGACGCTATGTACTTCTTTTGATGTCACTATTCTCAATCTATTGTGGATTAATCTACAATGAATTCTTTTCTGTTCCGTTTCACATATTTGGTGAGTCAGCTTACAGATGCCGAGATAATACATGCAGGGATGCACATACTATTGGCTTGGTCAAAGTCCGAGATCCATATCCATTTGGTGTGGATCCCAAGTGGCGTGGAAGTCGTTCAGAGTTGGCTTTTCTGAACTCTATGAAGATGAAGATGTCCATTCTGCTTGGTGTGGTGCATATGAACTTGGGAATTATATTAAGTTATTTTAATGCTCGGTTTTTTGGGAACTCACTGGATATAAGGTACCAGTTTGTGCCGCAGATGATTTTCCTTAACAGTTTATTTGGGTATCTTTCCCTCCTCATTGTTGTTAAGTGGTGTACTGGTTCTCAGGCGGACCTTTATCATGTAATGATATACATGTTTTTGAGCCCCACAGATAATCTTGGTGATAATGAGCTGTTCTGGGGTCAAAGGCCACTTCAAATTGTATTATTGCTTTTGGCACTGATTGCGGCTCCGTGGATGCTCTTTCCAAAACCTTTTATACTAAAGAAGATTCATACTGAGAGATTTCAAGGTCGTAGTTATGGTATTCTTAATACCTCTGAGATGGATCTTGAGGAGCCAGATTCTGCCAGGCAACATCATCATGAAGAATTCAATTTCAGTGAGGTTTTTGTTCACCAAATGATCCACGCCATTGAGTTTATTCTAGGTTCAGTTTCAAATACAGCTTCGTATCTTCGACTTTGGGCACTTAGCTTGGCTCACTCCGAACTTTCTACTGTTTTCTATGAGAAAGTTCTGCTTCTTGCTTGGGGGTATGACAATCTTATCATTCGGTTACTGGGGCTAGCCGTGTTTGCCTTTGCAACTGCCTTTATACTGCTTATGATGGAGACTCTTAGTGCTTTTCTTCATGCCCTGCGGCTTCACTGGGTCGAATTTCAAAACAAATTCTACCATGGTGATGGCTACAAATTCAAGCCTTTTTCCTTTGCAGCCTTAACAGATGATGATGAATGA 2472 0.4211 MFLDKMEKFLDNLTPMDLMRSEKMTFVQLIIPAESAHRAISYLGELGLLQFRDLNADKSPFQRTFVNQVKRCAEMSRKLRFFKDQINKAGIMSSSHTALQPEIDLEDLEIQLAEHEHELIEMNSNSDKLRQSYNELLEFKIVLQKACGFLVSSHGRAIPDERELQENVYSNDFVETTSLLEQEIRPGPSNPSGLRFISGIICKSKLLRFERMLFRATRGNMLFNQAPADDQIMDPVSAEMIEKTVFVVFFSGEQARTKILKICEAFGANCYPVPEDISKQRQITREVSSRLTDLEATLDAGLRHRNKALASVGEHLSDWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKTQIQEALQRATFDSSSQVGIICHPMDAVESPPTYFRTNSFTSPYQEIVDAYGVARYQEANPAVYTTIVFPFLFAVMFGDWGHGICLLLGALILIARESKLSTQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPFHIFGESAYRCRDNTCRDAHTIGLVKVRDPYPFGVDPKWRGSRSELAFLNSMKMKMSILLGVVHMNLGIILSYFNARFFGNSLDIRYQFVPQMIFLNSLFGYLSLLIVVKWCTGSQADLYHVMIYMFLSPTDNLGDNELFWGQRPLQIVLLLLALIAAPWMLFPKPFILKKIHTERFQGRSYGILNTSEMDLEEPDSARQHHHEEFNFSEVFVHQMIHAIEFILGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLIIRLLGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFKPFSFAALTDDDE* 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0437 823 PIRSF ATP6V0A1 14 823 IPR026028 GO:0000220|GO:0046961
Amo18g0437 823 Coils Coil 105 132 - -
Amo18g0437 823 PANTHER VACUOLAR PROTON ATPASE A1 10 823 - -
Amo18g0437 823 Pfam V-type ATPase 116kDa subunit family 42 815 IPR002490 GO:0033179|GO:0046961|GO:1902600
Amo18g0437 823 PANTHER VACUOLAR PROTON ATPASES 10 823 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0437 Amo-Chr18 5775578 5783949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0437 6 816 Primary Pumps ATPases(2) AT2G28520 81.104 0.0 1360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0437 K02154 - gmx:100776037 1491.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0437 18 5775578 5783949 Amo18g0437 18 5775578 5783949 ECH
Amo18g0437 18 5775578 5783949 Amo08g1077 08 18150495 18157872 hybridization