Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0433 ATGTTCGATCTTAACCTGAATGCCGATTCCACTCAGCACGATGACTCGCCCGTGCTGCTCGGGGAGAAGATTCCGGAAGCGTCCTCCGGGACCTCGAATTCCTCCGTGGTGAATGCGGAGGGTTCGAGCAACGGAGGTGGTGCCGGAGACGACGACTCGTGTTCCACACGCGCCACTGGCAGCGGCGATGTGTACACCTTCAATTTCGATATTCTGAAGGTGGAAGGCGGGAGCGACAGCTCCGTCGCGACGAAGGAACTGTTTCCGGTGAGCGCCGGGAACTGGCAGGGGCAGGCTTCGACGTCGTCGATTCCGGCGAGGAAGAGCTGGATGGATCTGTCGCTGGATCAGCATCGAGGTGAAAGCGCGGAGATGAAGAAGATTGTTCAGGTTCAGCAGCAGCAACAGCAACAACAGCCTCCGCAAGCGAAGAAGAGTAGGAGGGGCCCACGCTCAAGGAGCTCGCAGTACAGAGGTGTCACCTTCTACAGGAGGACCGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTTTATTTGGGTGGATTTGACACCGCTCATGCCGCTGCTAGAGCTTATGATCGAGCTGCTATCAAGTTTAGGGGACTTGATGCTGACATCAATTTTAATCTCGTTGACTATGAGGACGATCTCAAACAGATGAAAAATCTCTCCAAGGAGGAATTTGTTCACATACTCCGTCGCCAAAGCACTGGTTTCTCAAGAGGAAGTTCAAAATACCGAGGAGTGACACTTCACAAATGTGGCCGGTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAAGCAGCTATCAAATGCAATGGAAGAGAGGCAGTCACTAACTTCGAGCCAAGTACGTATGAAAGCGAGGTCAAAACTGAAGCCATTAGTGAAGGTGGCAGTCACAACCTTGACCTCAATTTAGGCATGGCTACCCCAGGACATGATCCCAAAGAAAACAGGGGGAATCTTCAGTTCCAGTCTGTCCCTTACGATGTGCATCCCGGAAGAAGTTCGAGGATGGAAACCCATGTTAATTCAGTTATTGGTGATCCGTCTTTTAAAAGGCTGGTTGTAAATGAAGAGCGTTCTTCTGTCTGGAATGCCTCGTATTCGAGTTTCTTTCCCAGTGAGGAAAGAGCAGAGAGAATCGGCATAGATCCCTCACATGGAGTCCCAGGCTGGGCGTGGCAAACTCACGGTCCGGGCAGTGCTACCCCAGTACCACCGTTCTCTACTGCAGCATCATCAGGATTCTCAATTTCTGCTACCTATCCATCGCCTGCCATGTTTCCAACAAAACCGATGAACTCAATTCCTCAGAGTATCTCATTTGCTTCATCCGTTGCACCTGGTAGCAATGCAGCTCATCAATACTATTACCAGGTGAAGTCCCCGCACGCACCATCCTAA 1479 0.5091 MFDLNLNADSTQHDDSPVLLGEKIPEASSGTSNSSVVNAEGSSNGGGAGDDDSCSTRATGSGDVYTFNFDILKVEGGSDSSVATKELFPVSAGNWQGQASTSSIPARKSWMDLSLDQHRGESAEMKKIVQVQQQQQQQQPPQAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVDYEDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYESEVKTEAISEGGSHNLDLNLGMATPGHDPKENRGNLQFQSVPYDVHPGRSSRMETHVNSVIGDPSFKRLVVNEERSSVWNASYSSFFPSEERAERIGIDPSHGVPGWAWQTHGPGSATPVPPFSTAASSGFSISATYPSPAMFPTKPMNSIPQSISFASSVAPGSNAAHQYYYQVKSPHAPS* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0433 492 PRINTS Ethylene responsive element binding protein signature 287 307 IPR001471 GO:0003700|GO:0006355
Amo18g0433 492 PRINTS Ethylene responsive element binding protein signature 249 260 IPR001471 GO:0003700|GO:0006355
Amo18g0433 492 ProSiteProfiles AP2/ERF domain profile. 248 305 IPR001471 GO:0003700|GO:0006355
Amo18g0433 492 SMART rav1_2 248 311 IPR001471 GO:0003700|GO:0006355
Amo18g0433 492 SMART rav1_2 156 218 IPR001471 GO:0003700|GO:0006355
Amo18g0433 492 CDD AP2 247 307 IPR001471 GO:0003700|GO:0006355
Amo18g0433 492 MobiDBLite consensus disorder prediction 1 55 - -
Amo18g0433 492 CDD AP2 156 211 IPR001471 GO:0003700|GO:0006355
Amo18g0433 492 MobiDBLite consensus disorder prediction 128 157 - -
Amo18g0433 492 Pfam AP2 domain 156 204 IPR001471 GO:0003700|GO:0006355
Amo18g0433 492 Pfam AP2 domain 247 297 IPR001471 GO:0003700|GO:0006355
Amo18g0433 492 MobiDBLite consensus disorder prediction 128 145 - -
Amo18g0433 492 Gene3D AP2/ERF domain 155 214 IPR036955 GO:0003700|GO:0006355
Amo18g0433 492 Gene3D AP2/ERF domain 247 306 IPR036955 GO:0003700|GO:0006355
Amo18g0433 492 SUPERFAMILY DNA-binding domain 155 212 IPR016177 GO:0003677
Amo18g0433 492 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 460 - -
Amo18g0433 492 MobiDBLite consensus disorder prediction 26 55 - -
Amo18g0433 492 SUPERFAMILY DNA-binding domain 247 306 IPR016177 GO:0003677
Amo18g0433 492 ProSiteProfiles AP2/ERF domain profile. 156 212 IPR001471 GO:0003700|GO:0006355
Amo18g0433 492 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0433 Amo-Chr18 5726914 5731655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0433 144 372 AP2-EREBP Transcription Factor Family AT4G36920 71.983 1.23e-97 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Amo18g0433 AP2 2.9e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0433 K09284 - gmx:100777102 707.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0433 18 5726914 5731655 Amo18g0433 18 5726914 5731655 ECH
Amo18g0433 18 5726914 5731655 Amo13g0356 13 4793262 4797137 ECH
Amo18g0433 18 5726914 5731655 Amo13g0356 13 4793262 4797137 PCT
Amo13g0356 13 4793262 4797137 Amo18g0433 18 5726914 5731655 PCT