Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0428 ATGCTTTACAGGCAACAATGTGCAGCTAAACAGATGGCAAATAGTACATGTTCTAGCTCAGGTTCAATGGATTCAAACCAGAAGCCAATAAAAGAAAAGAGTGTGAAACAATTGACATTTGAAGCTAAGGAAGTCAATGACAATGAGGAGCACGATTTGGGAACTTCACACTTAGAAACAAAGAGAATGGATGCTCGTTGGTACCGGTCTCTGTTTCGAAAACCAAAAAATGGTAAGGTTGAGGTGCCTCAAAGGGTTCAACCTGATATCTTTAGAAACGAGACAGCACAAATGCCAGAGTCAAGGAATCCATTACTGGATGAAGATTTAGTTAGGAACGATGTTGGGCATGATGGAGAAAAATCGACTCATTCTAAGAGAAATGGAATCATGTTGGACACGGGTTCAGATCTTTCTACCACATTGGCTGATGATGATGATTGCAACCTCATCCCTTCAAGGTTGCGTGACAATATTGTAGGGACTGGTGGGTCATGTTCCAAACGGAGAAGGTTGGATTGTGATCCTGTGGTCTCATCTAACCCTTCTACAACTGAGGATGGAGTTGATACTGATGCAAGTGTGTTGCAAAAGGAATATCCTGTAAATTCACCAAAAGAAGTCACAAAGCACACATGTCTAATTTGCAAGAGTGGTGGACAGCTACTGTTTTGTGGTGGAAAAGGATGCAGCGGGTGCTACCATTCTTCTTGTCTTGAGCCACCCCTGGTCGATGCCTCCATTGGAGTTTGGTATTGCCATTTCTGTGTGAGGAAGAAGATTGAACTTGGTGTATATTCTGTATCGGAGGGAGTAGAATCAATTTGGGATGTCAAAGAAGTTTTGACATCAAATTTTGATGGGTCTACTCTTGCTCAGAAAGAATATCTAGTGAAATATAAAGGCATTGCTCATGTTCATAATCGATGGATACCGGAAAATCAGTTACTTCGTGAAGCTCCTTCACTTCTTAAAAACTTTAATATGAAAAATCAGGACCAAAGGTTGAAGCTAGAATGGAGTCTACCTGATCGTCTGCTGCAGAAGAGAGCAATAATCCATTCCACACAGCAAGATGATCACAACATTAATGATGGAGTTCAAAACTTAAACTGTTGCTACGAATGGCTTGTGAAATGGCGTGGTCTTGGTTATGAGCATGCTACATGGGAGTTGGACAATGAGTTGTTTCTTCGTTCACCTGAAGGTCAGAGGTTAATCAGAGGCTATGAAGAATGTTTCCAGAGAGAAAAGAGAGCAGCTTCTTGCTCCAGAGTAGATAATGTGCCACAGATTGATCAACTCAAGGAGCGGCCGTCAAGTCATCTTGCATATAAATGCAAGTCGGACTCTTTCAAGTTTATTGAGTATTGGGTTCCTGTCCAGATATCTCATGTGCAGCTTGAGCAGTATTGTGCTACTTTACATTCAAATGCTTCAATTCTGCGTTCATCAGCAAAGACGGATATCGATGCCCTTCGTGACATCATTATTACGGCCCGAAAGTGTTGTATTCATCCTTCTATTGTTGATCAAACACTGAAAAGTCGACTTACTGTTGGCCTTGATGAGGCTGAATTCATCGATGTTGATATAAAAGCAAGTGGCAAGCTGCAACTACTTGATTCGATGCTCATGGAGTTGAAGGCTAAAAGCTTAAGGGGTCTGATTCTTTTTAAGTCTATTGGTGGTTCTGGGAGGGTTTCTGCAGGAGATTTTTTGGATGACTTGTTACGGATAAGATTTGGTCCAAACTCGTATGAACGGGTTGACAAAGGTCTTTTAGTGTCCAAGCAGAAAGATGCCATGAGGAAATTTAACAACAAGGATGATGGACGGTTTGTTTTTCTGTTAGATGCATGTGCCTGCCGTCCAGGCATCAGATTATCATCACTGGATACCATTATTATATTTGACAGTGATTGGAACCCAACTAATGATATAAGATCCCTTCAGAAGATAACAATTGATTCACAGCCCCAAGTGATAAAAATATTCCGCTTATATTCAGCCTTCACTGTGGAAGAAAATGCCTTGATCCTTTCAAAGCAAGATAGGATACTTGACAGCAATTTACTGAACATAAGCAGGACTACCTGCCAAATGCTGTTGATGTGGGGAGCTGCTTCCCTATTTGATGATTTGAAAATTTTCCATCACAGTGAAACTTCTGTTTTGGGTCAGAAATCTTCATCTGGGCAACAACATCTGACAGAAACAGTCCGTGAATTATCATCAGTACTATCTCAGGACGCTGAAACAAGAAACTGTTCAGTTTTATTAAAAGTCAGGCAAAATGGGTCAACATACCAGGCAGATTTTCCTTTGCCTGGTGAGATGAAAAATAAGATACTGGAGGAAGAGCTTCCCCATATTTTTTGGACAAAACTTTTTGAGGGGAAACAGTTTAAGTGGAAGTACTCTTGTAGTTCATCTCAGCGGAGCCGAAAGAGAGTAGATCTTTTTGATGGTAGTGGAGGTATAGCGAAAAAGCGCCGGAAAGTGAGAAACAATCTTGTGGACCAGCCTTCTTCAAAATCTGAAGGTTCAAAGTTATCTACTGGGATCAAGACAGATAGACTTGGATTTGATGATGTCGAATATGAGGAAACAACTAGACTGCGTGATGAGCAGAGGAGCTTATATCTTTCTTTGAAGCCAGAGATCAAAAAGCTTTGTGGCGTTCTTCTTCTCCCTGATAACGTCAGAGATATGGTTGATAATTTTCTTGAATTTGTTGTGAACAATCATCATGTCAACAGGGAGCGAGAACCAGTATCAATGTTACAGGCTTTTCAAATATCTTTGATTTGGACTGTTGCTCCATTGCTAAAGCACAAAGTTGACCACAGGGATTCTCTTTTACTTGCAAAACAGCATTTGGATTTTGTCTGTAGGAAAGAAGAGGTGGATTATATCTACTCAGTTTTACGCTGTCTGAAGGGACTTTTTTTACATCGGATGGGAAATTCAAAGGATACTGGTTCTCCAAAATCTCCTGAGTCATCAAGGAAGGTTTATTCCAATAAAGAAGTAGGGCAGGAGGCTGACTTGTTTAAAAATGATGTGTTCAGAAGTATTAGGGAAATACGGAAGAAGTGCCAAGAGCAGTTGAAGAAACTTAAACGGATGCAACAAGAAGAGAAGCAAAGATTAGAAACAGCTTTTGAGGATGAAAAGGCTGAATTTGAGAAAAAGTACAAAATAGAGTCATTGGTTATTCGGACCTGCTCTCCAAATGATGTGATGAAGACAGAGAAGCTCAAAGTCTTGAACACTGAATTTGGTTCAAAAATTGAAGAACTAAAATGTGAGCATGAAACACGTCTAAAGGCTCTTGAGGACACACATATGGCTGCTAGGCAGAACTTCAAACATAGAGAAGACGCATGGGCACAAGATGTAGAGGATTGGGCAAAAAGTGAATTGTCAAACATAGATGCTTCAAAGGAACTTGGTACGGCAGTTGAATACACGCAGCTGTCTGATCAGGAAAATGCTCACAAGGGTTCAGAGAGTATGCCCCTTGTGTCTGATCATTTGACTGATGAGAAGGGTCATGATAATAACACAAATGAGGCCATGCCTAATGATGTTCAGGATGAAGTTCATTCTTCTACACACAATAAACTAGATGGGACTGTTTCAAGCCTGTCTTGTGAGAATGCCGTGCAAACTCATGGAGCTTATAATGGTTTGGATAATGCTACCACTGAAACTTCACATTTACCTAATGAAGGGATTGCTGATGGGGCCATGGCAGGCATAGTGAATAGAGATGCACCCAGAAAGCCTACCACCGTCACTGCTACTGATTGTCTGGAAAATGTTTCAGCTGATAGTCCTCCTCCATCTGTGGAGCAAGTAACTGATGGAGTTGCTTTAAATGAAATTTTAGATAGATGTGCCACCCCAGAAACTAGCCACGATCAGGGCAGAGTAAGCATATTGGGACGAGAGGTACCTGTGGAAGTGGAAACACATAGGATGGTCAATTTTAGTGAATGTCCCGTAAATGCTGCTGCTGTCAATCATTTCTCATCTGTGGATCAAACATCTGACAAAGGACCTATAAATGACCCAGATAGTACTGTCTCATCATTCAGGTGTTGTCAAGCTGATGGTCCTGATAAAAGTTCCCTTTCAAATCCACCTTTGGTACAACAATTTACTGATGTAGTCTCTTTGAATGAACCTGATGGAGATACTCATGAAGCAGCTGATTGTCATAATGATACAAGGCCTTCCACAGACACTTCTTCAGTGGATAAAAGTAGTATGATACCAGCCCAGCTGGAAGGAGTGCAGCAATCACCATCTCTGGAGGCCCCTCCTGCTCAGGATACTGCTGGAGAAGTGCAGAATTCTTCTGAACGAGCTGAGATAGTACCTAATCTAGTTGGTGTTGTTCCAGCTAATCAATCAAATTCATGCATCCTGGAGCCTTCCGAGAATGGAGTTGAACATCAGCCGAACAGAAATGATCTCCCCCACCACGAAACAGAGGTTTCAGCTGTGGTTCCTAATCAGGATGTTGTGCAGGCTGACTCAAATTTAGAGCTTGGTTCACACTCGCAAGCAGTTGTGCACTCTGTCCTAAATTCAGGCCATGATTCACTTGGGCCAGTTGGAGTCAGAAGAGAGGCTTCAAGTTCAAGCTTGAGAAATTTGTCAACTCCTTCAGAAATCAACAATCATCCTATACATACTGCAACTCATTCAGCTTCTAGAATGCCTCTGCCGTTGAGCGCCGATCCACTTAAAAATGAATTGGAAAGAATAAAAAAAATTATTGAACAACTGACCAAAAACCATGAAGAAATGAGAGCTAAACTGAAGTCTGATTTCGAAAAGGAATTGGAGGCACTTCGTAGGAAGTATGATATTAAATTTCAATTGGTTGAGAATGAATTTCAACAAACGAAGAACAGGTTGGATTCAAGTTACCACACAGTTTTGGTAAATAAGATGTTGGCAGATTTTTTTCGGTCCAAATGCATGTATCGTAAAACATCTGATGCATATGGAGTGCAGCAAGATGCAGGTGTTGCCCAGCAGTCGATTCAGCTTGCAAGACAACAAAGTGCTACTTTTCCTTCCCAGGTTGTTGCTGGTTCATCTTCCCGGGGACCACTTTCTGCCAATCTTCATAGTCCATCTGCTTTGGTTAGCTCTCAGAATTCGCTCCCACCTTCAAATGTTACTTACAAGACACCAAGTCCTCCTGCAAGACTTCCTCTTAACTGCAATTCTTCACCCTCAGGGAATTTTCCGATTGCCAGTGAGATGCGAGCCCCGGCACCACATCTCCAGCCTTTTAGACCCTCGACACCTATGCTGGCTCCTAATCACCCTGCTCTCCTTCATGGGATGCCAAATCAGGCTGCACCTGCGATTGCTCCCACATTGTCTTGTGTTCCAGCCCAACCAACTCCACTGACATATCAGTCTGATCCTCAGATGGCCCACCAGCCGAATAGCTCTGTTGGAACTGGTGGGTTTTCCACCCTCAACTTACGGACCATCAGCTTACATGCGAATGCCAACACTCAATCTGCTGTTTGTCTTCCAAGAGTTCAGCCAAGTATGTCAGAAGTGGTTTCTTTGAACCCACCCAGAATTGGCACCAGTGTTAGTGTGACTCCTAACTCATCCAGTCAAGCTGCATCTCTTGAATTAGTCTGTTTATCAGACGATGAGTGA 5703 0.4205 MLYRQQCAAKQMANSTCSSSGSMDSNQKPIKEKSVKQLTFEAKEVNDNEEHDLGTSHLETKRMDARWYRSLFRKPKNGKVEVPQRVQPDIFRNETAQMPESRNPLLDEDLVRNDVGHDGEKSTHSKRNGIMLDTGSDLSTTLADDDDCNLIPSRLRDNIVGTGGSCSKRRRLDCDPVVSSNPSTTEDGVDTDASVLQKEYPVNSPKEVTKHTCLICKSGGQLLFCGGKGCSGCYHSSCLEPPLVDASIGVWYCHFCVRKKIELGVYSVSEGVESIWDVKEVLTSNFDGSTLAQKEYLVKYKGIAHVHNRWIPENQLLREAPSLLKNFNMKNQDQRLKLEWSLPDRLLQKRAIIHSTQQDDHNINDGVQNLNCCYEWLVKWRGLGYEHATWELDNELFLRSPEGQRLIRGYEECFQREKRAASCSRVDNVPQIDQLKERPSSHLAYKCKSDSFKFIEYWVPVQISHVQLEQYCATLHSNASILRSSAKTDIDALRDIIITARKCCIHPSIVDQTLKSRLTVGLDEAEFIDVDIKASGKLQLLDSMLMELKAKSLRGLILFKSIGGSGRVSAGDFLDDLLRIRFGPNSYERVDKGLLVSKQKDAMRKFNNKDDGRFVFLLDACACRPGIRLSSLDTIIIFDSDWNPTNDIRSLQKITIDSQPQVIKIFRLYSAFTVEENALILSKQDRILDSNLLNISRTTCQMLLMWGAASLFDDLKIFHHSETSVLGQKSSSGQQHLTETVRELSSVLSQDAETRNCSVLLKVRQNGSTYQADFPLPGEMKNKILEEELPHIFWTKLFEGKQFKWKYSCSSSQRSRKRVDLFDGSGGIAKKRRKVRNNLVDQPSSKSEGSKLSTGIKTDRLGFDDVEYEETTRLRDEQRSLYLSLKPEIKKLCGVLLLPDNVRDMVDNFLEFVVNNHHVNREREPVSMLQAFQISLIWTVAPLLKHKVDHRDSLLLAKQHLDFVCRKEEVDYIYSVLRCLKGLFLHRMGNSKDTGSPKSPESSRKVYSNKEVGQEADLFKNDVFRSIREIRKKCQEQLKKLKRMQQEEKQRLETAFEDEKAEFEKKYKIESLVIRTCSPNDVMKTEKLKVLNTEFGSKIEELKCEHETRLKALEDTHMAARQNFKHREDAWAQDVEDWAKSELSNIDASKELGTAVEYTQLSDQENAHKGSESMPLVSDHLTDEKGHDNNTNEAMPNDVQDEVHSSTHNKLDGTVSSLSCENAVQTHGAYNGLDNATTETSHLPNEGIADGAMAGIVNRDAPRKPTTVTATDCLENVSADSPPPSVEQVTDGVALNEILDRCATPETSHDQGRVSILGREVPVEVETHRMVNFSECPVNAAAVNHFSSVDQTSDKGPINDPDSTVSSFRCCQADGPDKSSLSNPPLVQQFTDVVSLNEPDGDTHEAADCHNDTRPSTDTSSVDKSSMIPAQLEGVQQSPSLEAPPAQDTAGEVQNSSERAEIVPNLVGVVPANQSNSCILEPSENGVEHQPNRNDLPHHETEVSAVVPNQDVVQADSNLELGSHSQAVVHSVLNSGHDSLGPVGVRREASSSSLRNLSTPSEINNHPIHTATHSASRMPLPLSADPLKNELERIKKIIEQLTKNHEEMRAKLKSDFEKELEALRRKYDIKFQLVENEFQQTKNRLDSSYHTVLVNKMLADFFRSKCMYRKTSDAYGVQQDAGVAQQSIQLARQQSATFPSQVVAGSSSRGPLSANLHSPSALVSSQNSLPPSNVTYKTPSPPARLPLNCNSSPSGNFPIASEMRAPAPHLQPFRPSTPMLAPNHPALLHGMPNQAAPAIAPTLSCVPAQPTPLTYQSDPQMAHQPNSSVGTGGFSTLNLRTISLHANANTQSAVCLPRVQPSMSEVVSLNPPRIGTSVSVTPNSSSQAASLELVCLSDDE* 1901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0428 1900 Coils Coil 1584 1618 - -
Amo18g0428 1900 SUPERFAMILY Chromo domain-like 373 412 IPR016197 -
Amo18g0428 1900 SUPERFAMILY FYVE/PHD zinc finger 201 260 IPR011011 -
Amo18g0428 1900 MobiDBLite consensus disorder prediction 1701 1734 - -
Amo18g0428 1900 MobiDBLite consensus disorder prediction 1701 1739 - -
Amo18g0428 1900 MobiDBLite consensus disorder prediction 1436 1457 - -
Amo18g0428 1900 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 540 704 IPR001650 -
Amo18g0428 1900 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 263 IPR013083 -
Amo18g0428 1900 ProSiteProfiles Chromo and chromo shadow domain profile. 347 422 IPR000953 -
Amo18g0428 1900 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 430 1854 - -
Amo18g0428 1900 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 13 416 - -
Amo18g0428 1900 Gene3D - 455 689 IPR027417 -
Amo18g0428 1900 Gene3D - 1584 1665 - -
Amo18g0428 1900 ProSitePatterns Zinc finger PHD-type signature. 213 256 IPR019786 -
Amo18g0428 1900 Gene3D - 342 409 - -
Amo18g0428 1900 ProSiteProfiles Chromo and chromo shadow domain profile. 276 339 IPR000953 -
Amo18g0428 1900 ProSiteProfiles Zinc finger PHD-type profile. 210 259 IPR019787 -
Amo18g0428 1900 Coils Coil 1024 1062 - -
Amo18g0428 1900 CDD SF2_C_SNF 535 648 - -
Amo18g0428 1900 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 430 1854 - -
Amo18g0428 1900 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 13 416 - -
Amo18g0428 1900 SMART chromo_7 275 332 IPR000953 -
Amo18g0428 1900 SMART chromo_7 339 415 IPR000953 -
Amo18g0428 1900 MobiDBLite consensus disorder prediction 1164 1214 - -
Amo18g0428 1900 Gene3D - 264 337 - -
Amo18g0428 1900 Pfam Chromo (CHRromatin Organisation MOdifier) domain 360 396 IPR023780 -
Amo18g0428 1900 Pfam Chromo (CHRromatin Organisation MOdifier) domain 276 328 IPR023780 -
Amo18g0428 1900 MobiDBLite consensus disorder prediction 1349 1370 - -
Amo18g0428 1900 MobiDBLite consensus disorder prediction 1398 1412 - -
Amo18g0428 1900 MobiDBLite consensus disorder prediction 1376 1396 - -
Amo18g0428 1900 Gene3D - 428 454 IPR038718 -
Amo18g0428 1900 SUPERFAMILY Chromo domain-like 229 333 IPR016197 -
Amo18g0428 1900 MobiDBLite consensus disorder prediction 1349 1424 - -
Amo18g0428 1900 SMART PHD_3 212 257 IPR001965 -
Amo18g0428 1900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 454 694 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0428 Amo-Chr18 5640334 5652969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0428 213 380 Core DNA Replication Machinery Family AT4G14700 27.429 2.98e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0428 - K11642 aip:107610432 3642.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0428 18 5640334 5652969 Amo18g0428 18 5640334 5652969 ECH