Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo18g0420 | ATGGGTTCAGGTACCAATTTGGTTACCACGGTCATTGGGTTTGGGATGAGTGCCACTTTCATTGTGTTTATGTGCACAAGAATCAATTGTGGGAGGATAAGAGAGAGTGTTGAATCTCGCGTGATGTATGAGATTGAATCTAGGATTGACATAGAAAAGCCAAAACATCATGCTAATGACCTTGAATCCAAGCCTGTTATGCTTGATGCAATCCCCATTTTGAAGTTCAACCAAGAGACCTTCAGTGCTATAGAAGATACACAGTTAAGTTTGGTCTCTCAGTTTCAGCTCATGTACAACTTCACTTCATGGATTCGAAATAAGCTCAACCAAGGAGTCAATGAATGGATAACTAATTTGCATTACTTCTACAGGTGTGTCATATGTTTGGCAGATTACAAAGAAAGAGAAATGTTACGCATCATGCCGAAATGCGATCACACATTTCATCTTTCTTGCATTGACATATGGCTGAGGAAACAATCCACTTGCCTGGTATGCCGTCTGCCGTTAAAAAACTCATCCGAGGCGAAACATGTTAGAACTGTTGCATTTACCATGAGCCAGCCTCTTGATGAGTCGCACAAGAATCGGCCTGTTCAAAGTTCAAACCCTTATACAGCTCCTTGTGAAGTGTGGGTCACGCAACATGATATGAATCTTGGAAGCATTAGTGGGTCCACCATTCATGAGCCCAGGGCGAAATAG | 708 | 0.4209 | MGSGTNLVTTVIGFGMSATFIVFMCTRINCGRIRESVESRVMYEIESRIDIEKPKHHANDLESKPVMLDAIPILKFNQETFSAIEDTQLSLVSQFQLMYNFTSWIRNKLNQGVNEWITNLHYFYRCVICLADYKEREMLRIMPKCDHTFHLSCIDIWLRKQSTCLVCRLPLKNSSEAKHVRTVAFTMSQPLDESHKNRPVQSSNPYTAPCEVWVTQHDMNLGSISGSTIHEPRAK* | 236 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo18g0420 | 235 | SUPERFAMILY | RING/U-box | 125 | 174 | - | - | |
| Amo18g0420 | 235 | CDD | RING-H2_EL5_like | 125 | 168 | - | - | |
| Amo18g0420 | 235 | SMART | ring_2 | 126 | 167 | IPR001841 | - | |
| Amo18g0420 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 117 | 178 | IPR013083 | - | |
| Amo18g0420 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 126 | 168 | IPR001841 | - | |
| Amo18g0420 | 235 | PANTHER | OS11G0150450 PROTEIN | 1 | 209 | - | - | |
| Amo18g0420 | 235 | Pfam | Ring finger domain | 126 | 168 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo18g0420 | Amo-Chr18 | 5521387 | 5523246 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo18g0420 | 126 | 188 | C3H Transcription Factor Family | AT2G35910 | 46.970 | 7.81e-15 | 69.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo18g0420 | - | - | aip:107610428 | 315.464 |