Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0407 CAGATTTTGAGCAAGCTAGCTGCTTGTGAGTTCTGTTGTCATCGGCACACACAACCATCAACCAAGTCTCTCTCCGATCTTCAGCTTCAGTTCCAATGTCTAATCAGGGCGAATCATCGGACCCGAAATCGGGGAAGAAGGACTACTCAACGGCCATTCTTGAGCGGAAGAAGTCGCCGAACCGTCTTGTGGTGGATGAAAGCCGTCAATGACGACAACTCAGTCGTGTCCATGCACCCTGATACCATGGAGAAGCTCCAGCTCTTCCGTGGCGACACTATCCTCATCAAGGGCAAGAAAAGGAGGGATACTGTTTGCATAGCTCTTGCTGATGACACCTGTGAAGAGCCCAAGATCAGGATGAACAAAGTTGTGAGGTCGAATTTGCGGGTTCGTCTTGGAGATGTTGTGTCCGTGCACCAGTGCCCTGATGTGAAGTATGGGAAACGTGTGCACATTCTGCCTATTGATGATACCATTGAAGGTGTCACTGGCAATCTGTTTGATGCTTTCTTGAAACCTTACTTCTTGGAAGCTTATCGTCCTGTCAGAAAAGGAGATCTATTTCTTGTCCGTGGAGGGATGAGAAGTGTGGAGTTTAAGGTCATTGAAACTGATCCTGGGGAGTACTGTGTGGTTGCTCCAGATACTGAAATCTTCTGCGAGGGGGAGCCTTTGAYAAGAGAGGATGAAGAGAGGCTGGATGAAGTTGGATATGATGATGTGGGTGGAGTCAGGAAACAAATGGCACAAATTCGTGAGTTGGTAGAGCTTCCCTTGAGGCATCCACAACTCTTTAAGTCGATTGGTGTGAAACCACCCAAAGGTATTCTACTTTATGGACCCCCTGGTTCTGGGAAGACACTGATAGCAAGAGCTGTTGCTAATGAAACGGGAGCTTTCTTCTTTTGTATAAATGGACCGGAGATTATGTCCAAACTGGCAGGAGAGAGTGAAAGCAATCTGAGGAAAGCATTTGAAGAGGCTGAAAAGAATGCACCATCCATCATCTTCATTGATGAAATTGATTCTATTGCACCCAAGAGGGAGAAGACACATGGTGAAGTTGAAAGGAGGATTGTTTCACAGCTTTTGACTCTTATGGATGGATTGAAATCTCGTGCTCATGTCATTGTTATTGGAGCTACCAATCGCCCAAACAGCATTGACCCAGCATTGAGAAGGTTTGGTAGATTTGATAGGGAAATTGATATTGGTGTTCCTGATGAGGTTGGCCGACTTGAAGTTCTTCGTATACACACTAAAAACATGAAGCTCTCTGATGATGTTGATTTAGAGAGGATTTCCAAAGACACACACGGTTATGTTGGTGCAGACCTTGCTGCCCTTTGCACTGAAGCTGCTTTGCAATGCATTAGAGAGAAGATGGATGTCATTGACTTGGAAGATGAAACTATTGATGCTGAAATACTGAATTCTATGGCAGTTACAAATGAGCATTTCCAGACCGCTCTTGGAACGAGCAACCCATCTGCTTTGCGTGAAACTGTTGTTGAAGTMCCTAATYTTAGTTGGGAGGACATTGGAGGCCTTGAGAATGTCAAGCGTGAGCTGCAAGAGACTGTTCAGTATCCTGTGGAGCACCCAGAAAAGTTTGAGAAGTTTGGCATGTCACCATCTAAAGGAGTCCTCTTCTATGGTCCTCCAGGATGTGGAAAAACTTTGTTAGCCAAAGCAATTGCTAATGAATGTCAAGCTAACTTCATCAGTGTGAAAGGCCCAGAATTACTTACAATGTGGTTTGGTGAAAGTGAAGCCAATGTTAGAGAAATTTTTGACAAGGCTAGACAGTCGGCTCCGTGTGTCCTCTTCTTCGATGAGCTCGACTCCATTGCCACTCAGAGAGGAAGCAGTGTTGGGGATGCTGGTGGTGCTGCTGACAGAGTTTTGAATCAACTTCTGACTGAAATGGATGGCATGTCAGCCAAAAAGACTGTGTTCATAATTGGGGCAACTAACAGACCAGACATCATTGACCCAGCACTTCTTCGGCCAGGCCGTCTGGATCAATTGATCTATATTCCTCTTCCCGATGAGGATTCCCGTCACCAGATCTTCAAGGCCTGCTTGAGGAAGTCACCTGTGTCCAAAGATGTTGATTTGAGAGCACTGGCCAGATATACTCAAGGATTCAGTGGTGCTGATATTACTGAGATATGCCAGCGAGCATGCAAATATGCTATTAGAGAAAACATCGAAAAGGACATAGAACGAGAGAGGAGGAAAAGCGAGAACCCTGAGGCCATGGARGAAGATGTRGTCGACGACGAAGTTGCAGAGATCAAGGCTGCTCATTTTGAAGAGTCAATGAAGTTTGCCCGCAGGAGTGTCAGCGACGCYGATATTCGCAAATACCAGGCATTTGCTCAGACCTTACAGCAGTCGAGGGGATTCGGAAGTGAGTTTAGGTTTCCAGAAACTGCTGAGAGGACTACTGGATCTGATCCCTTTGCAACTGCTGCTGGCGCAGCCGATGAAGATGATCTGTATAGTTAG 2517 0.4585 QILSKLAACEFCCHRHTQPSTKSLSDLQLQFQCLIRANHRTRNRGRRTTQRPFLSGRSRRTVLWWMKAVNDDNSVVSMHPDTMEKLQLFRGDTILIKGKKRRDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPLXREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERISKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGTSNPSALRETVVEVPNXSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALARYTQGFSGADITEICQRACKYAIRENIEKDIERERRKSENPEAMEEDVVDDEVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPETAERTTGSDPFATAAGAADEDDLYS* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0407 838 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 508 797 IPR027417 -
Amo18g0407 838 Gene3D - 242 406 IPR027417 -
Amo18g0407 838 CDD AAA 243 406 - -
Amo18g0407 838 ProSitePatterns AAA-protein family signature. 653 671 IPR003960 GO:0005524|GO:0016887
Amo18g0407 838 Gene3D - 500 683 IPR027417 -
Amo18g0407 838 SUPERFAMILY ADC-like 61 142 IPR009010 -
Amo18g0407 838 SMART CDC48_2_2 162 228 IPR004201 -
Amo18g0407 838 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 498 IPR027417 -
Amo18g0407 838 Pfam Cell division protein 48 (CDC48), domain 2 164 225 IPR004201 -
Amo18g0407 838 SMART AAA_5 546 685 IPR003593 -
Amo18g0407 838 SMART AAA_5 273 409 IPR003593 -
Amo18g0407 838 PANTHER AAA-FAMILY ATPASE 66 814 - -
Amo18g0407 838 Gene3D - 145 241 - -
Amo18g0407 838 ProSitePatterns AAA-protein family signature. 377 395 IPR003960 GO:0005524|GO:0016887
Amo18g0407 838 Pfam ATPase family associated with various cellular activities (AAA) 277 406 IPR003959 GO:0005524|GO:0016887
Amo18g0407 838 Pfam ATPase family associated with various cellular activities (AAA) 550 683 IPR003959 GO:0005524|GO:0016887
Amo18g0407 838 Gene3D - 408 499 - -
Amo18g0407 838 Pfam AAA+ lid domain 429 471 IPR041569 -
Amo18g0407 838 Pfam AAA+ lid domain 705 745 IPR041569 -
Amo18g0407 838 Pfam Cell division protein 48 (CDC48), N-terminal domain 72 143 IPR003338 -
Amo18g0407 838 Gene3D - 687 796 - -
Amo18g0407 838 SMART CDC48_N_2 59 145 IPR003338 -
Amo18g0407 838 Gene3D - 43 144 - -
Amo18g0407 838 CDD AAA 516 683 - -
Amo18g0407 838 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 66 814 - -
Amo18g0407 838 SUPERFAMILY Cdc48 domain 2-like 144 236 IPR029067 -
Amo18g0407 838 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 74 800 IPR005938 GO:0016787
Amo18g0407 838 MobiDBLite consensus disorder prediction 805 838 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0407 Amo-Chr18 5412632 5417080 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0407 479 742 Calmodulin-binding Proteins AT3G56690 48.106 4.09e-79 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0407 K13525 - gmx:100783508 1476.46