Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0400 ATGTCTAATCAGGGCGAATCATCAGACCCGAAATCGGGGAAGAAGGACTACTCAACGGCGATTCTTGAGCGGAAGAAGTCGCCCAACCGTCTCGTGGTGGATGAAGCCGTCAACGACGACAACTCCGTGGTGTCCATGCACCCTAATACCATGGAGAAGCTCCAGCTCTTCCGTGGCGACACTATCCTCATCAAGGGAAAGAAAAGGAGGGATACTGTTTGCATAGCTCTTGCTGATGACACCTGTGAAGAGCCCAAGATCAGGATGAACAAAGTTGTGAGGTCGAATTTGCGGGTTCGTCTTGGAGATGTTGTGTCTGTGCACCAGTGCCCTGATGTGAAGTACGGGAACCGTGTGCACATTCTGCCTATTGATGATACCATTGAAGGTGTCACTGGCAATCTGTTTGATGCTTTCTTGAAACCTTACTTCTTGGAAGCTTATCGTCCTGTCAGAAAAGGAGATCTATTTCTTGTCCGTGGAGGGATGAGAAGTGTGGAGTTTAAGGTCATTGAAACTGATCCTGGGGAGTATTGTGTGGTTGCTCCAGATACTGAAATCTTCTGTGAGGGGGAGCCTTTGAAAAGAGAGGATGAAGAGAGGCTGGATGAAGTTGGATATGATGATGTGGGTGGAGTCAGGAAACAAATGGCACAAATTCGTGAGTTGGTAGAGCTTCCCTTGAGGCATCCACAACTCTTTAAGTCGATTGGTGTGAAACCACCCAAAGGTATTCTACTTTATGGACCCCCTGGTTCTGGGAAGACACTGATAGCAAGAGCTGTTGCTAATGAAACGGGAGCTTTCTTCTTTTGTATAAATGGACCGGAGATTATGTCCAAACTGGCAGGAGAGAGTGAAAGCAATCTGAGGAAAGCATTTGAAGAGGCTGAAAAGAATGCACCATCCATCATCTTCATTGATGAAATTGATTCTATTGCACCCAAGAGGGAGAAGACACATGGTGAAGTTGAAAGGAGGATTGTTTCACAGCTTTTGACTCTTATGGATGGATTGAAATCTCGTGCTCATGTCATTGTTATTGGAGCTACCAATCGCCCAAACAGCATTGACCCAGCATTGAGAAGGTTTGGTAGATTTGATAGGGAAATTGATATTGGTGTTCCTGATGAGGTTGGCCGACTTGAAGTTCTTCGTATACACACTAAAAACATGAAGCTCTCTGATGATGTTGATTTAGAGAGGATTTCCAAAGACACACACGGTTATGTTGGTGCAGACCTTGCTGCCCTTTGCACTGAAGCTGCTTTGCAATGCATTAGAGAGAAGATGGATGTCATTGACTTGGAAGATGAAACTATTGATGCTGAAATACTGAATTCTATGGCAGTTACAAATGAGCATTTCCAGACCGCTCTTGGAACGAGCAACCCATCTGCTTTGCGTGAAACTGTTGTTGAAGTGCCTAATGTTAGTTGGGAGGACATTGGAGGCCTTGAGAATGTCAAGCGTGAGCTTCAAGAGACTGTTCAGTATCCTGTGGAGCACCCAGAAAAGTTTGAGAAGTTTGGCATGTCACCATCTAAAGGAGTCCTCTTCTATGGTCCTCCAGGATGTGGAAAAACTTTGTTAGCCAAAGCAATTGCTAATGAATGTCAAGCTAACTTCATCAGTGTGAAAGGCCCAGAATTACTTACAATGTGGTTTGGTGAAAGTGAAGCCAATGTTAGAGAAATTTTTGACAAGGCTAGACAGTCGGCTCCGTGTGTCCTCTTCTTCGATGAGCTCGACTCCATTGCCACTCAGAGAGGAAGCAGTGTTGGGGATGCTGGTGGTGCTGCTGACAGAGTTTTGAATCAACTTCTGACTGAAATGGATGGCATGTCAGCCAAAAAGACTGTGTTCATAATTGGGGCAACTAACAGACCAGACATCATTGACCCAGCACTTCTTCGGCCAGGCCGTCTGGATCAATTGATCTATATTCCTCTTCCCGATGAGGATTCCCGTCACCAGATCTTCAAGGCCTGCTTGAGGAAGTCACCTGTGTCCAAAGATGTTGATTTGAGAGCACTGGCCAGATATACTCAAGGATTCAGTGGTGCTGATATTACTGAGATATGCCAGCGAGCATGCAAATATGCTATTAGAGAAAACATCGAAAAGGACATAGAACGAGAGAGGAGGAAAAGCGAGAACCCTGAGGCCATGGATGAAGATGTTGTCGACGACGAAGTTGCAGAGATCAAGGCTGCTCATTTTGAAGAGTCAATGAAGTTTGCCCGCAGGAGTGTCAGCGACGCAGATATTCGCAAATACCAGGCATTTGCTCAGACCTTACAGCAGTCGAGGGGATTCGGAAGTGAGTTTAGGTTTCCAGAAACTGCTGAGAGGACTACTGGATCTGATCCCTTTGCAACTGCTGCTGGCGCAGCCGATGAAGATGATCTGTATAGTTAG 2421 0.4581 MSNQGESSDPKSGKKDYSTAILERKKSPNRLVVDEAVNDDNSVVSMHPNTMEKLQLFRGDTILIKGKKRRDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGNRVHILPIDDTIEGVTGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPLKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERISKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALARYTQGFSGADITEICQRACKYAIRENIEKDIERERRKSENPEAMDEDVVDDEVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPETAERTTGSDPFATAAGAADEDDLYS* 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0400 806 Pfam Cell division protein 48 (CDC48), N-terminal domain 30 111 IPR003338 -
Amo18g0400 806 Gene3D - 210 374 IPR027417 -
Amo18g0400 806 Gene3D - 376 467 - -
Amo18g0400 806 MobiDBLite consensus disorder prediction 1 23 - -
Amo18g0400 806 SMART CDC48_2_2 130 196 IPR004201 -
Amo18g0400 806 SUPERFAMILY ADC-like 26 110 IPR009010 -
Amo18g0400 806 Pfam ATPase family associated with various cellular activities (AAA) 245 374 IPR003959 GO:0005524|GO:0016887
Amo18g0400 806 Pfam ATPase family associated with various cellular activities (AAA) 518 651 IPR003959 GO:0005524|GO:0016887
Amo18g0400 806 Gene3D - 113 209 - -
Amo18g0400 806 Pfam Cell division protein 48 (CDC48), domain 2 132 193 IPR004201 -
Amo18g0400 806 SUPERFAMILY Cdc48 domain 2-like 112 204 IPR029067 -
Amo18g0400 806 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 5 782 - -
Amo18g0400 806 Pfam AAA+ lid domain 673 713 IPR041569 -
Amo18g0400 806 Pfam AAA+ lid domain 397 439 IPR041569 -
Amo18g0400 806 Gene3D - 655 764 - -
Amo18g0400 806 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 31 768 IPR005938 GO:0016787
Amo18g0400 806 ProSitePatterns AAA-protein family signature. 345 363 IPR003960 GO:0005524|GO:0016887
Amo18g0400 806 Gene3D - 468 651 IPR027417 -
Amo18g0400 806 MobiDBLite consensus disorder prediction 9 23 - -
Amo18g0400 806 ProSitePatterns AAA-protein family signature. 621 639 IPR003960 GO:0005524|GO:0016887
Amo18g0400 806 PANTHER AAA-FAMILY ATPASE 5 782 - -
Amo18g0400 806 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 765 IPR027417 -
Amo18g0400 806 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 466 IPR027417 -
Amo18g0400 806 CDD AAA 484 651 - -
Amo18g0400 806 SMART AAA_5 514 653 IPR003593 -
Amo18g0400 806 SMART AAA_5 241 377 IPR003593 -
Amo18g0400 806 Gene3D - 8 112 - -
Amo18g0400 806 SMART CDC48_N_2 30 113 IPR003338 -
Amo18g0400 806 CDD AAA 211 374 - -
Amo18g0400 806 MobiDBLite consensus disorder prediction 773 806 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0400 Amo-Chr18 5309698 5314229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0400 447 710 Calmodulin-binding Proteins AT3G56690 48.485 3.60e-80 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0400 K13525 - gmx:100783508 1541.55