Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0350 ATGCACCTAAGCCCTTACAAAAAAACACACTTCAATAACAACATTCCTCATCTTCATCATCATCATCATATCCATGATGATGATGCTTCAACCATAGACATGCATAACAACACCACCACCACCAACTCAACCAGCCGGTGTTCCTCCGATTCCGGTGAGCCATGTGAGGATGGTAAATGGGCTTGCAAGCTCCTCAAGGAGTGTGCCATCGCCATCTCACAAAGAGACTCCACCAAAATCCACCACCTTTTATGGATGCTCAACGAACTCGCTTCCCCTTACGGCGACTTGGATCAGAAGCTCGCCTCTTACTTCTTGCAAGCCTTGTTCTGCAAGGCCACGGAATCCGGCCACCGTTGCTACAAGACTCTCTCAACCGTCGCTCAAAAGAGCAACAACTTCGACTCCGCCAGAAAATTGATACTCAAATTCCAAGAAGTCTCCCCTTGGACAACCTTCGGACACGTGGCAGCCAACGGAGCAATACTCGAGGCCTTGGAAGGCGAGTCCAACCTCCACATAATTGACATAAGCAACACTCTTTGCACCCAGTGGCCAACGCTGTTCGAAGCGCTGGCCACCAGGAACGACGAAACTCCTCGTCTCAGACTTACTGTGGTGGCGCTCAGCTCCGCCACAGTAAGTTCTGTGATGAAGGAGGTCGGACAGAGAATGGAGAAGTTCGCGAGACTCATGGGAGTTCCCTTTGAATTCAACGTAATCAACGGTCTCGATCGCCTCGGAGAGCTCACGAAGGAATCGTTAGGGATTACAAACGACGAAGCCATCGCCGTGAATTGCATCGGAGCGTTGAGAAGGATCGAGGTTGAAGAAAGAGAATCGGCAATTCGCATGTTCAGATCGCTTAATCCGAAGGTCGTAACCGTCGTTGAGGAAGAAGCCGATTTCAGCAGCAATCGAAACGATTTCGTTCAGTGCTTCGAAGAGTGCCTTAAATTCTACGGCTTATACTTCGAGATGTTGGAAGAGAGTTTTCCATTAACGAGCAACGAACGGTTGATGTTAGAGAGAGATTGTTCTAGAAGCATAGTTAGGGTTTTGGCTTGTGGCGGTGGTGATGAACAAAACAATAATGATCAAAATAATAATAATAATAAAGAAGAGTTTGAAGATTGTTGTGAGAGAAGAGAGAGAGGAACACAGTGGTGTGAGAAGCTGAAGAAGGAGTTTTCAGCCGCAAAGTTCAGCGATGACGTCGTTGATGATGTTAAAGCATTGCTCAAGAGATACCGTGGAGGTTGGTCACTGGTTTTGCCACAACAACAACAAGAACAAGAAGAAGGACATAATAGTAATTACAATAATAATACTCTCTCAGGAATTTACTTGACATGGAAGGAGGAACCTGTAGTTTGGGCATCAGCATGGAAACCCTAG 1398 0.4678 MHLSPYKKTHFNNNIPHLHHHHHIHDDDASTIDMHNNTTTTNSTSRCSSDSGEPCEDGKWACKLLKECAIAISQRDSTKIHHLLWMLNELASPYGDLDQKLASYFLQALFCKATESGHRCYKTLSTVAQKSNNFDSARKLILKFQEVSPWTTFGHVAANGAILEALEGESNLHIIDISNTLCTQWPTLFEALATRNDETPRLRLTVVALSSATVSSVMKEVGQRMEKFARLMGVPFEFNVINGLDRLGELTKESLGITNDEAIAVNCIGALRRIEVEERESAIRMFRSLNPKVVTVVEEEADFSSNRNDFVQCFEECLKFYGLYFEMLEESFPLTSNERLMLERDCSRSIVRVLACGGGDEQNNNDQNNNNNKEEFEDCCERRERGTQWCEKLKKEFSAAKFSDDVVDDVKALLKRYRGGWSLVLPQQQQEQEEGHNSNYNNNTLSGIYLTWKEEPVVWASAWKP* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0350 465 MobiDBLite consensus disorder prediction 33 51 - -
Amo18g0350 465 Pfam GRAS domain family 63 464 IPR005202 -
Amo18g0350 465 MobiDBLite consensus disorder prediction 28 53 - -
Amo18g0350 465 ProSiteProfiles GRAS family profile. 52 464 IPR005202 -
Amo18g0350 465 PANTHER PROTEIN SHORT-ROOT-LIKE 33 464 - -
Amo18g0350 465 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 33 464 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0350 Amo-Chr18 4690232 4691629 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0350 57 465 GRAS Transcription Factor Family AT4G37650 49.061 3.34e-137 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo18g0350 GRAS 1.1e-87 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0350 - - ahf:112773020 850.892
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0972 19 16310747 16312848 Amo18g0350 18 4690232 4691629 PCT
Amo09g0466 09 5780264 5782417 Amo18g0350 18 4690232 4691629 PCT