Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0342 ATGGAACCATACCCTTATTCTCCCAAGAGAAGTGGTGCCTCGTATTGGGGATCTTGTAGAGTTCAATTGGAGGGATCAACATCATTAGATGGTGATATGAGCAATTCAATTTCAGATGATATGGCTTGTAGCTTCTCCGGGCTCATGAATATTGATCCTTATGCCGGCTTGTACAATAGCCCATCGATAACTGATCAGGTTTTCAGTAATGGCCTTCCATCATCATATCCATCGACCCCTGGGTTCAATCTAGAGGAAAACAATAGTAGCCAATTCTTCAGGACAGAAATGAATGGATATTTCAACACTAAACAAGGCTCCCCTGGTTATGGGGAGAAAATTGCGTTTCAACAAATGGACACCTTACTTGGTTTTTTTGATGGCACAGATGATACACATAGTTTAAGTTCTATGCAAAAAATTAATGGCTCTTCTCAACACCTTGATGCCATTGGCAGTTATATCATGTCCAAGCCAGCTAGTTTGTCACTTGATGAGAGAATGTTGAAAGCCTTGTCCGTCTTTAAGGAATCAGCTGGTGGTGGAATATTGGCACAGGTTTGGGTTCCTATAAAGGATGGTGATCAATTCTTCTTGACCACAAGTGAACAGCCTTATTTACTAGACCAAATTCTTGCCGGATATCGTGAAGTGTCAAGAACATACACATTTTCTACTGAAGGAAAACCGGGTTCTCTCCCAGGACTTCCTGGTCGTGTGTTTATGTCCAAAACTCCTGAGTGGACTTCCAACATTGGTTATTACAATAAGAATGAGTACTTGAGGATGGATGATGCGATTAATCATGAGGTTCGTGGATCAATTGGTTTACCCATATCTGATCTGCACTCTGAACTGCCATGTTGTGCTGTACTGGAACTTGTCACTACAAATGAAAAGCCTGATTTTGAGAAGGAAATGGATATTGTTTGTCATGCACTACAGAATGTAGATCTAACGGCTAATATGCCTCCTCGACTTCTTCCTCAGTGTCTTTCAAACAGCAAACGTGCTGCTTTGACAGCCATAGTTGATGTCTTACGATCCGTTTGTCATGCGCATAGATTGCCAATGGCACTGACATGGATTCCTTGTTGTGTCGCTGAGGACGCAGAAGGTAAAGATACAAAGATACACATTAAAGAGGGTCATTCGAGTCCTCGTGAAAAGAACATACTATGCGTTGAAGAATCAGCATGCTATGTAACTGATAAAGCAATGGAAGGATTTGTTCATGCTTGCATTGAACACCATCTTCAGGAAGGGAAAGGTATAGCTGGGAGAGCTCATCAATCAAATCATCCTTTCTTTTGTCCTGATGTGAAGGCCTATAATATTAGTGAATATCCACTTGTTCATCATGCGCGCAAGTACAATCTGAATGCTGCAGTTGCAATTAGGCTGAGGAGTACTTATACTAATGATGATGATTACATACTGGAATTCTTTTTGCCTGTAAACATGAAAGGGAGCTCAGAACAGCAACTTCTCTTAGACAACCTCTCAGGTACCATGCAGAAAGTTTGTAGGAATTTAAGAACAGTTTCAGATGAGGAATTATCAAGAATGAAAGGCTCACATGTAGGATTTAAAAACAAAAATGTCCCTAGAATTTTTCCTATGTCCAGGAGAAACTCCCAAATACCATTAACAAACAGTAACCATGATTCAGTCCGTAAGATGTCCATCAAGGCATCTAACCAAGGAAACAATGGAATTGAGTCTTCTCATAACCAGGAAAGAAATCGATCAAGAAGGATGGTTGAGACAAAGAGACCAGCTGAGAAGAAAGTTAGTTTGAGTGTTCTTCAGCAACACTTTTCCGGTACTCTGAAGGATGCTGCTAGGAGCATTGGTGTTTGCCCGACAACTCTGAAAAGGATATGCAGGAAACAAGGGATTTCGAGATGGCCATCCCGCAAGATCAAGAAAGTGAACCGATCGTTAAAGAAAATACAGACCGTGCTCGACACTGTCGAAGGACTGGAAGGAGGGTTGAAGTTTGATCCCTGTATAGGGGCACTTGTATCAAGAGAAGGAGAATCAATCATCCAAGAAATTGATGCACACGATACTCTTTTGCACCCTGAGAATGTTACTGCAAAAGAAAAATGGATTCTGAACAAGGGTGGTTCAAGAGAAGACAAATCAAAACATTCAAGTATCTTGGTTAATAGGGATGATGATGGAGCTGTTGAACATAACCACCCTTCTTCTTCAGGCTTTACAAACTCATCTAATGATTCTGGTTCAAACCAGAGGCAGAACTTGAAAGGCAAATCAACCTTTGCCGATAAAACTGGGTTGAAACTTCAAGCCAAAGCTACCTATGGCGAAGACACTGTTCGTTTCAAGTTTGATCCATCCTGGGGTTGTTTGAAGCTATATGAAGAAGTTGCAACAAGGTTCAAATTACAAAATGGGTCGTTTCAACTCAAATATCTAGATGATGAACAAGAGTTGGTGAGGTTGTTAGATGACTCAGATTTGCAGGAGTGTATTGAAATATTGGATGAAGCTGGGAAAAGTTGTGTCAGGTTTGTTGTTCGCGACATACCATGCAATTTAAGCAGCTCCAGCTGCAGTAGTTGCTACCTAGGATGTGACTCATAG 2613 0.4106 MEPYPYSPKRSGASYWGSCRVQLEGSTSLDGDMSNSISDDMACSFSGLMNIDPYAGLYNSPSITDQVFSNGLPSSYPSTPGFNLEENNSSQFFRTEMNGYFNTKQGSPGYGEKIAFQQMDTLLGFFDGTDDTHSLSSMQKINGSSQHLDAIGSYIMSKPASLSLDERMLKALSVFKESAGGGILAQVWVPIKDGDQFFLTTSEQPYLLDQILAGYREVSRTYTFSTEGKPGSLPGLPGRVFMSKTPEWTSNIGYYNKNEYLRMDDAINHEVRGSIGLPISDLHSELPCCAVLELVTTNEKPDFEKEMDIVCHALQNVDLTANMPPRLLPQCLSNSKRAALTAIVDVLRSVCHAHRLPMALTWIPCCVAEDAEGKDTKIHIKEGHSSPREKNILCVEESACYVTDKAMEGFVHACIEHHLQEGKGIAGRAHQSNHPFFCPDVKAYNISEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMKGSSEQQLLLDNLSGTMQKVCRNLRTVSDEELSRMKGSHVGFKNKNVPRIFPMSRRNSQIPLTNSNHDSVRKMSIKASNQGNNGIESSHNQERNRSRRMVETKRPAEKKVSLSVLQQHFSGTLKDAARSIGVCPTTLKRICRKQGISRWPSRKIKKVNRSLKKIQTVLDTVEGLEGGLKFDPCIGALVSREGESIIQEIDAHDTLLHPENVTAKEKWILNKGGSREDKSKHSSILVNRDDDGAVEHNHPSSSGFTNSSNDSGSNQRQNLKGKSTFADKTGLKLQAKATYGEDTVRFKFDPSWGCLKLYEEVATRFKLQNGSFQLKYLDDEQELVRLLDDSDLQECIEILDEAGKSCVRFVVRDIPCNLSSSSCSSCYLGCDS* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0342 870 SUPERFAMILY CAD & PB1 domains 771 854 - -
Amo18g0342 870 Pfam PB1 domain 773 851 IPR000270 GO:0005515
Amo18g0342 870 ProSiteProfiles PB1 domain profile. 770 852 IPR000270 GO:0005515
Amo18g0342 870 PANTHER PROTEIN NLP8 6 703 IPR045012 GO:0003700
Amo18g0342 870 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 728 867 - -
Amo18g0342 870 PANTHER PROTEIN NLP8 728 867 IPR045012 GO:0003700
Amo18g0342 870 MobiDBLite consensus disorder prediction 578 595 - -
Amo18g0342 870 ProSiteProfiles RWP-RK domain profile. 574 665 IPR003035 -
Amo18g0342 870 Pfam RWP-RK domain 598 645 IPR003035 -
Amo18g0342 870 MobiDBLite consensus disorder prediction 727 759 - -
Amo18g0342 870 SMART PB1_new 770 852 IPR000270 GO:0005515
Amo18g0342 870 MobiDBLite consensus disorder prediction 736 759 - -
Amo18g0342 870 MobiDBLite consensus disorder prediction 565 595 - -
Amo18g0342 870 Gene3D - 769 853 - -
Amo18g0342 870 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 6 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0342 Amo-Chr18 4634993 4640670 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0342 771 867 NLP Transcription Factor Family AT2G43500 64.948 6.63e-31 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Amo18g0342 PB1 6.6e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0342 - - aip:107613413 1733.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0342 18 4634993 4640670 Amo18g0342 18 4634993 4640670 ECH
Amo18g0342 18 4634993 4640670 Amo13g0630 13 7828518 7838230 PCT
Amo13g0630 13 7828518 7838230 Amo18g0342 18 4634993 4640670 PCT