Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0334 ATGAAGTGCATGTGTGAAAAAGAATCTGCTCTATGTTCTGTTCATGCAACACCAGCCTATGTTCTTGGATGCTCATCATCATGGGGTAATTCTCCTGAATCTGATGTTGTCCAACAATCATCCATGTCTGATAAATTGAACTTAAACATGGGTGTTGTTCTGCCACAACAATGTCACAAGAGTAGGCCACTAAATCTCCAATTTCAAGAGCAGGATTCATCTTCAACTCTTTCCACCAATCAATCTGGTCAAATTTCTATCCAGCATAGCAATTCTTCAGCTTGTTCATCATCACTTAGCAGAAATATGGAGAAGAGTGCTGGAAATCAAATCAGTTCTTCAATGGGGATTCTTGATTTTTCCTTCCCTCCTTCGGAACTCGATCGCGGCCAATCAACTGCTCCAATTGCATTTCATTGTGCATATCCATGCTATGGTGGCATACTAGCTGCTGCATATGACCAACACTCTAAGGTAATTGGAAGTGAAGCAGTTCGGATTCCTCTGCCACTTGATCTAAGAGAAGAACCTATATATGTGAATTCAAAGCAGTATCATGCTATATTGAGACGTAGACAGTACCGAGCTAAACTCGAAGCACATAACAAACTCATCAGAGATCGCAAACCTTATCTTCACGAGTCTCGCCATCTACATGCACTCAAGAGAGCTAGAGGTGCTGGTGGACGCTTTCTCAACACTAAAAACCTCGTCCAATCAAAGGTTACTTCTACCACCACCACTTCTTCCTACCAGGCTTACATTGGAAGGGATATCCAGGACTATACGGCAGATACCGGTGGCGCCGCCAGTCACCGCCGTCTGTCTGTTCTTATGTGA 840 0.4333 MKCMCEKESALCSVHATPAYVLGCSSSWGNSPESDVVQQSSMSDKLNLNMGVVLPQQCHKSRPLNLQFQEQDSSSTLSTNQSGQISIQHSNSSACSSSLSRNMEKSAGNQISSSMGILDFSFPPSELDRGQSTAPIAFHCAYPCYGGILAAAYDQHSKVIGSEAVRIPLPLDLREEPIYVNSKQYHAILRRRQYRAKLEAHNKLIRDRKPYLHESRHLHALKRARGAGGRFLNTKNLVQSKVTSTTTTSSYQAYIGRDIQDYTADTGGAASHRRLSVLM* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0334 279 PRINTS CCAAT-binding transcription factor subunit B signature 177 199 IPR001289 GO:0003700|GO:0006355
Amo18g0334 279 PRINTS CCAAT-binding transcription factor subunit B signature 208 231 IPR001289 GO:0003700|GO:0006355
Amo18g0334 279 SMART cbf3 173 234 IPR001289 GO:0003700|GO:0006355
Amo18g0334 279 ProSitePatterns NF-YA/HAP2 subunit signature. 179 199 IPR018362 GO:0003677|GO:0016602
Amo18g0334 279 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 35 251 - -
Amo18g0334 279 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 35 251 IPR001289 GO:0003700|GO:0006355
Amo18g0334 279 Gene3D - 174 236 - -
Amo18g0334 279 MobiDBLite consensus disorder prediction 70 99 - -
Amo18g0334 279 ProSiteProfiles NF-YA/HAP2 family profile. 174 234 IPR001289 GO:0003700|GO:0006355
Amo18g0334 279 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 231 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0334 Amo-Chr18 4578168 4580341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0334 4 240 CCAAT-HAP2 Transcription Factor Family AT1G17590 43.254 5.84e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Amo18g0334 CBFB_NFYA 1.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0334 K08064 - gmx:100803893 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0334 18 4578168 4580341 Amo18g0334 18 4578168 4580341 ECH
Amo13g0691 13 8449317 8453098 Amo18g0334 18 4578168 4580341 PCT