Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0333 ATGGAAGGAGGAGGACGAACGGTGGAAGAGATTTACGAGGATTTCAAGGGTCGAAGAGCTGCCATCATCAAAGCCCTCACAACCGATGTTCAGGATTTCTACAACCAATGCGATCCTGAGAAGGAGAATTTATGCTTATATGGATTACCTAGTGGGCAGTGGGAAGTAAATTTACCTGTTGAAGAAGTTCCACCAGAACTTCCTGAGCCTGTGCTGGGCATTAACTTTGCTAGGGATGGCATGCAAGAAAAGGACTGGTTATCTTTAGTTGCTGTCCATAGCGATACATGGCTGGTTGCTCTTGCCTTCTATTTTGGAGCCAGATTTGGGTTTGATAGAGCTGACAGGAAACGACTATTTAATCTGATCAATGAACTACCGACAATATTTGAAGTTGTTACCGGTTCAGCAAAAAAACAAGCTAAAGAGAAGTCCTCAGTCTCAAACAACAGCGGCAGCAAATCTAAGTCCAGCTCCAAAGCGCGGGCTTCTGAGTCGCAGGGTAGACAGTCAAAGGCATTCCAACCAAAGGATGAGGATGAAGGAGCAGAAGAGCAAGATGATGAAGAACATGGAGAAGCCTTTTGTGGGGCATGCGGCGAGAGTACCGGTACTGATGAGTTCTGGATTTGCTGCGACATCTGCGAGAAGTGGTTCCATGGTAAATGCGTGAAGATTACCCCTGCTAGGGCAGAACATATGAAGCAATACAAGTGTCCATCATGCAGTGGTAACAAGAGAGCTCGCTGA 750 0.4627 MEGGGRTVEEIYEDFKGRRAAIIKALTTDVQDFYNQCDPEKENLCLYGLPSGQWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLVALAFYFGARFGFDRADRKRLFNLINELPTIFEVVTGSAKKQAKEKSSVSNNSGSKSKSSSKARASESQGRQSKAFQPKDEDEGAEEQDDEEHGEAFCGACGESTGTDEFWICCDICEKWFHGKCVKITPARAEHMKQYKCPSCSGNKRAR* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0333 249 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Amo18g0333 249 MobiDBLite consensus disorder prediction 141 171 - -
Amo18g0333 249 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 1 249 - -
Amo18g0333 249 Pfam PHD-finger 195 243 IPR019787 -
Amo18g0333 249 Pfam Alfin 7 135 IPR021998 GO:0006355|GO:0042393
Amo18g0333 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 243 IPR013083 -
Amo18g0333 249 PANTHER CPG BINDING PROTEIN 1 249 IPR045104 GO:0006355|GO:0042393
Amo18g0333 249 SUPERFAMILY FYVE/PHD zinc finger 185 245 IPR011011 -
Amo18g0333 249 CDD PHD_AL_plant 195 245 IPR044104 -
Amo18g0333 249 SMART PHD_3 195 243 IPR001965 -
Amo18g0333 249 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Amo18g0333 249 MobiDBLite consensus disorder prediction 141 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0333 Amo-Chr18 4574526 4577524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0333 1 249 Alfin-like Transcription Factor Family AT3G42790 72.441 1.31e-122 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Amo18g0333 Alfin 9.8e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0333 - - gmx:100170700 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1035 19 17937399 17942473 Amo18g0333 18 4574526 4577524 ECH
Amo18g0333 18 4574526 4577524 Amo18g0333 18 4574526 4577524 ECH
Amo18g0333 18 4574526 4577524 Amo19g1035 19 17937399 17942473 PCT
Amo19g1035 19 17937399 17942473 Amo18g0333 18 4574526 4577524 PCT