LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo18g0328	ATGTCTAGCGCAGCCTCCCATGCTGACTTCTTTCAATGGATAAGACGTGGGTGTGATACTTGTGTGATCTTCGATAATTTTTGCAAGGAAGAGGATATGGCTGCGCATGCTTCTTCTGAGATTATTAAGTATGATGTCTTCCTCAGCTTCAGAGGCACAGACACTCGCTGTGGTTTTCTCAGCCATCTGCGCAAGGAATTAGAGGACAAACACATCAAGACATACGTGGATAATATGCTCAGAGAAGGAACTGAAATATCACACTCACTCCTTGCAGCCATTGAACAATCAGAAATTGCTTTGATCATATTCTCCCAGGATTATGCTTCTTCCAAATGGTGTTTGGAAGAACTAGCCAAAATAATGGAATGCAGGAAACAAAATGGTCAAATTGTAATACCTATTTTCCATAATGTAGACCCATTATGGGTGCGCCACCAAAAGGAAAGTTATCACCACGCCCTTGCTAATCATGAGGTGAGGTTTGCAGACAGGGTGCAAATKTGGAGAGATGCTCTCAAGGAAGCTGCCAATTTGTCTGGTTTCGATTCACAGTCATCACGCTTCAAGGATGATGCTGACCTTGTTGGTCAAATTGTCAAACGTGTCTTACAAAGGTTAAACCAATCACCCCAAGGTGATTTGCAGGGTCTTGTTGGAATTCATGGACCAATTGAAAAGCTAGTTTCGTTGTGCACGGAATCTGAAGKTGTTATTATTGGCCTTTGGGGCATGGGRGGTGTTGGTAAGACAACTCTTGCGACTGCAGTTTTCAATAGATTGTGTGATGGATTTGAAGGATTTTGCTTTTTGAAAAATGTAAGAGAAAGAGCTGAGAAATATGGTATAGATCATTTGAAGACAGAACTTCTTTCCAAACTGCTAAAGGAAGAAGATGCAAGTCCCTTTGTCACGCCTGGTGGYATAACTAATTTTGCCAAGAAAAGACTTGGTCGAACAAAGGTTCTTGTTGTTCTTGATGATGTCAATGATTCAGACCAAATGGAAGATTTATGTGGAGGACATACACGGTTTGGGGCAAGTAGCAAAATCATAGCGACAACAAGAGATAAGCATGTCCTTCTTAGGGCGGACACTGATCATATTCATCAAGTTAAGACYTTGAATTCTGATGATTCCCTTCAGCTTTTCAGCCTGAATGCCTTCAAGCAAAACTGCATTATAAAAGCAGAACAAGTTGAGTTGTCCAAGAGAGTGCTTAACTATTGCAAAGGCCTTCCTTTAGCAATAAAAATCTTGGGTTCCTTCCTTAAAGGAAAAACTCAACAAGAGTGGGAAAGTGAACTGGCCAAACTTGAAAAGACGCCTGATGAAAAAATCCAAAGAATATTACGATTGAGTTATAATGAATTAGATCGTAATGATCGGAATATATTTTTGGAACTTGCATGTTTCTTTGATAGAAATACAGAAGAAGAAGAGCAGATAAAATCTCTTCTTGATCACTGTGGATACACAACTACTATCGGGTTGACAAATCTTTGTAATAAAGCTCTTATTTCCATTTCAAACGATTGTGTGTCAATGCATGACTTAATTCGAGAAATGGGCCGTGAAATTGTTCGCGGAGAATGTCTAGATGATCCAGGAAAACGCAGTAGACTATGGGATTCTTGTGATACCTATGAAGTACTGAAATACAATAAGGGAACTCAAGTTATTCAAAGTATCACATTAAATATGTCTGAAATTGATATGATAAGGTTGCACCCTGAGACATTTGAAAGAATGCCAGAACTGAAGCTTGTTAGATTTCATTCATCCAATTCCAAAAATAAGTTGTGTGCTCCAGAAGGTATTACATCCCTGCCAAAGAAGTTAAGGTATTTTCATTGGGATGGGTTTCCTTCGAAATCTTTGCCATCTTCTTTTGGTGCTGAGAGATTTGTTGAAATCATAATGCCCAATAGTGGATTGCAAACGCTTTGGGAAGGTGAACAGAATCTTGTAAATCTAAGGAAAGTGGATCTTGATGGTTCATCAAGCCTAATGGAGCTCCCAGATTTATCAAAAGCTTCAAATCTTAGAGAAGTGAGTATCTCTGGTTGCAAGAGTCTGCGTCAAGTTCCTCCATCTGCTGTATGTTCCCAGAAGTTGAAATACCTGAACGTGAGCAACTGTGAGAGCCTTGAATCCATAGCAGAGCTTCCAGCATCGGTTGTGTACATAATTGCTCGCAACTGCCGCTCGCTACACACTGTATCTGTATCTGCTTTGGATTGTGTGGCCAAAGAACCGATCCTGCAGCAGCAATTTGAGGATATAACCTTCAACTTCACCAACTGCGACAAATTGAGAAGGAATTCAAAAAAGAGCATTATGGAACATGCCTATGGCAGACTAAAGCGACCACTAGCAGCAGCACCTACATGTGCTACAACACCATGGCTGGATAAGGAGGATAAGCACCCATTTCGTTATCTGTCGGGCAAGCAGCACAATCATCCCAAGTTAAATGTGTTGTCAGGTGCAGCCCCGGAATGGTTCAGATATATAAACCCACAAAGAGGGGCTGTTACTCTTGATGTTGCCCCAGGTGATAGCTTGTTGGGTTTCATCTTTTGGATCATTTTTCCTGCATACTATCGGAGTCACGAAGTGCAAGCCACTTCAGTGTCATATAAGTATTGGGTTAGAGTGATGCATGGCCCAAGTTTCAGTTATGACGGGCATTGGTTTCTAGGCGAGAATATATGGCTTAACGATAGCTATTTTTGGTACGACGGGCAATGCTGCATTGACATGATCAAGTTACCGTTACCCTATCGAGGAAGATGTTAA	2802	0.409	MSSAASHADFFQWIRRGCDTCVIFDNFCKEEDMAAHASSEIIKYDVFLSFRGTDTRCGFLSHLRKELEDKHIKTYVDNMLREGTEISHSLLAAIEQSEIALIIFSQDYASSKWCLEELAKIMECRKQNGQIVIPIFHNVDPLWVRHQKESYHHALANHEVRFADRVQXWRDALKEAANLSGFDSQSSRFKDDADLVGQIVKRVLQRLNQSPQGDLQGLVGIHGPIEKLVSLCTESEXVIIGLWGMGGVGKTTLATAVFNRLCDGFEGFCFLKNVRERAEKYGIDHLKTELLSKLLKEEDASPFVTPGGITNFAKKRLGRTKVLVVLDDVNDSDQMEDLCGGHTRFGASSKIIATTRDKHVLLRADTDHIHQVKTLNSDDSLQLFSLNAFKQNCIIKAEQVELSKRVLNYCKGLPLAIKILGSFLKGKTQQEWESELAKLEKTPDEKIQRILRLSYNELDRNDRNIFLELACFFDRNTEEEEQIKSLLDHCGYTTTIGLTNLCNKALISISNDCVSMHDLIREMGREIVRGECLDDPGKRSRLWDSCDTYEVLKYNKGTQVIQSITLNMSEIDMIRLHPETFERMPELKLVRFHSSNSKNKLCAPEGITSLPKKLRYFHWDGFPSKSLPSSFGAERFVEIIMPNSGLQTLWEGEQNLVNLRKVDLDGSSSLMELPDLSKASNLREVSISGCKSLRQVPPSAVCSQKLKYLNVSNCESLESIAELPASVVYIIARNCRSLHTVSVSALDCVAKEPILQQQFEDITFNFTNCDKLRRNSKKSIMEHAYGRLKRPLAAAPTCATTPWLDKEDKHPFRYLSGKQHNHPKLNVLSGAAPEWFRYINPQRGAVTLDVAPGDSLLGFIFWIIFPAYYRSHEVQATSVSYKYWVRVMHGPSFSYDGHWFLGENIWLNDSYFWYDGQCCIDMIKLPLPYRGRC*	934

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo18g0328	933	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	207	468	IPR027417	-
	Amo18g0328	933	SUPERFAMILY	Toll/Interleukin receptor TIR domain	42	182	IPR035897	-
	Amo18g0328	933	SUPERFAMILY	"Winged helix" DNA-binding domain	446	553	IPR036390	-
	Amo18g0328	933	Pfam	TIR domain	43	220	IPR000157	GO:0007165
	Amo18g0328	933	Gene3D	-	374	459	IPR042197	-
	Amo18g0328	933	SMART	till_3	43	179	IPR000157	GO:0007165
	Amo18g0328	933	PRINTS	Disease resistance protein signature	239	254	-	-
	Amo18g0328	933	PRINTS	Disease resistance protein signature	410	424	-	-
	Amo18g0328	933	PRINTS	Disease resistance protein signature	316	330	-	-
	Amo18g0328	933	PRINTS	Disease resistance protein signature	654	670	-	-
	Amo18g0328	933	Gene3D	Ribonuclease Inhibitor	551	757	IPR032675	-
	Amo18g0328	933	Gene3D	-	41	203	IPR035897	-
	Amo18g0328	933	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	36	744	IPR044974	GO:0006952
	Amo18g0328	933	ProSiteProfiles	TIR domain profile.	42	207	IPR000157	GO:0007165
	Amo18g0328	933	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	36	744	-	-
	Amo18g0328	933	Pfam	Leucine Rich Repeat	637	654	IPR011713	-
	Amo18g0328	933	Pfam	NB-ARC domain	226	459	IPR002182	GO:0043531
	Amo18g0328	933	SUPERFAMILY	L domain-like	529	742	-	-
	Amo18g0328	933	Gene3D	-	204	370	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo18g0328	Amo-Chr18	4511053	4524971	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo18g0328	638	732	WRKY Transcription Factor Family	AT4G12020	34.375	1.02e-06	51.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo18g0328	-		-	adu:107461399	1808.11