Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0301 ATGGATGATTCAACTTCAGATTGTCAGTTGAACCACGACGAAGTGGATTTTGAATTTGAATCGAACGAAGTTTCTGAGTTGAGTTGTTGTCGTTTGGATGTAGATCAGGAATTCTTGGGTCCCCTCTGTGTTGTTGATGACCAGTTTATTTCCAAGGTTGGAATGACTTTTAACACTCTTGAAGATGATGCAAAATTTTACAAGGACTATGTCAAGGCTGCATATTTTTCTACAAGAGTTCGGAGCACAAATAAGAAGGGAAACGAAATTAAGAATCAATTGATTACATGTAGTAGAGAGGGAAAATGGAAGTCTAAAATATCTCTGACTGAGAAGACAAATCCCACAACTGGTTTAAATTGTCCTGCAAGAATTTATATACACACATTGAAAGATGTTGGTGCTTGGATCATTTCGAAGGCCGTGTTGCATCATTCACATCCTTACTGTCCAACTCAAGCAGAAATGCTCAAACAGCACAGGGAACTAAGCATGTCCGTTCGTCGTACAATAGAGAATAACGAGAAGCCTAGGATGAGAAGCACACAAAGGAGCGAGAGCATGCATTCATTTTTTAACAAGTTCATTACACGGAACAGCTCGCTTATCCAATTTGTCAAACAATACGATAATTGCCTCGGAAGCAGGGAGCAAGCAGAGAGAGAATCGGATGCTGCAGATTTTCATACGGTCATACCGTATGCAACAAAATCCTCCATTGAAGCTCAATTTCAACATGTGTACACTCACCAAAAGTTTAGGAAAGTCCAAGCACAATTCATAGGAAAGGCGAATTGCATCACAAGATTAATGAACTCCGCTCTAGGCTATTCAGTATACGAAGTTTGTGAACAAGTTTCCAGCTCAATATTCAACAAGTTTGTGGTTACTTACGACTCAATAGCGGCCCAAGTGAAATGCCAATGCTTATTATTCGAGTCAAGAGGCATATTGTGCTGTCACGCCCTAAGTGTGTTAAGCTTTGAACGAGTAACCCAAGTGTCACCGAGATATATATTGGAACGATGGAGCAAGAAGGTAAAGAGCAGCCATAACGAGCCATTGTTGGAGCCAAGAAGCAAGAGGTTTGACGAATTGGTGTTTCAATCGGAGGAGTTGAGTGCCATTTTGCACCGTGCCTACGATAACGTCATGGTTGAGATGGAAGAACTGAAAGCCAAAAGGAAGGGGTCATGTTCGTTATCTCACGAAGATGCCAACTTGGAATCCGTTAATGAGCTTCAAAGCCCTCCAAGGGTTCTAACAAGAGGACGTCCAAAAAAATAG 1287 0.4126 MDDSTSDCQLNHDEVDFEFESNEVSELSCCRLDVDQEFLGPLCVVDDQFISKVGMTFNTLEDDAKFYKDYVKAAYFSTRVRSTNKKGNEIKNQLITCSREGKWKSKISLTEKTNPTTGLNCPARIYIHTLKDVGAWIISKAVLHHSHPYCPTQAEMLKQHRELSMSVRRTIENNEKPRMRSTQRSESMHSFFNKFITRNSSLIQFVKQYDNCLGSREQAERESDAADFHTVIPYATKSSIEAQFQHVYTHQKFRKVQAQFIGKANCITRLMNSALGYSVYEVCEQVSSSIFNKFVVTYDSIAAQVKCQCLLFESRGILCCHALSVLSFERVTQVSPRYILERWSKKVKSSHNEPLLEPRSKRFDELVFQSEELSAILHRAYDNVMVEMEELKAKRKGSCSLSHEDANLESVNELQSPPRVLTRGRPKK* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0301 428 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 179 405 IPR031052 GO:0006355
Amo18g0301 428 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 36 162 IPR031052 GO:0006355
Amo18g0301 428 MobiDBLite consensus disorder prediction 406 428 - -
Amo18g0301 428 SMART 26again6 305 332 IPR006564 GO:0008270
Amo18g0301 428 ProSiteProfiles Zinc finger SWIM-type profile. 294 330 IPR007527 GO:0008270
Amo18g0301 428 PANTHER OS03G0843700 PROTEIN 179 405 - -
Amo18g0301 428 PANTHER OS03G0843700 PROTEIN 36 162 - -
Amo18g0301 428 Pfam SWIM zinc finger 296 327 IPR007527 GO:0008270
Amo18g0301 428 Pfam FAR1 DNA-binding domain 65 149 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0301 Amo-Chr18 4178283 4190606 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo18g0301 FAR1 4.1e-09 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0301 - - adu:110280503 414.461