Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0296 ATGGGGCATCACTCTTGCTGCAACAAGCAGAAGGTCAAAAGAGGCCTTTGGTCACCAGAAGAAGATGAAAAACTCATCAACTACATCACCACCTATGGCCATGGTTGTTGGAGTTCTGTCCCTAAACTTGCAGGGTTGCAGAGGTGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTCAGACCTGATTTGAAACGTGGAAGCTTCTCTCCTCAAGAAGCAGCTCTCATTATTGACCTCCATAGCATTCTAGGCAACAGGTGGGCTCAGATTGCAAAGCACCTACCTGGAAGAACAGATAATGAGGTGAAAAACTTTTGGAATTCAAGCATCAAGAAGAAGCTTCTTTCCCATGATGTTCTTGTTCCTTCTTTGGCCACATTTTCTGATCATCATATCCATCATCATCATCATCATGGCCTTATTGCCAATAATAATGGTTCTTCCTTAGAAACTTTCTTCCCTGAAAACCCTATCCTAAACCCTCAGCTATACCTTCCAATAATCCCATCATCAATCCTTCAAGCTTTTGATCAACAAAATGTTATTGATATCAAGCAGCAGCAGCTTGATAACAATAACATTAATTATAACAATAATGGCAACAACTTCCATCACCATATTCAAATGCCTGCAGAAACAGTAGTAGTACCATCCATGAACACTACTGTTAATCCATCATCTTTGTATGAAGATACTTGGTCATCATCATCATCATTTGGATGTGTGCTACCTCTTCAAGAAGATCATCAGATTTCCAAAAATAGTAGTGATCATGATATTGCCATCACTGCTGCCACCCCATCAAACTATATTATTGATAAACTCATCATCAATAATCCAGTTAGTACTACATGGCAGCAGCATTTTGATCTTCATCACTTGATGGAACCAATTGTGCCAAAAGTCTGTGATATTAATAACACGAACATCATTGAGGATTATATTTGTGGCTTACCATATTCACCTGCTTCATCATCACAACAAGATCCTCTTGCTAGAATCCATTTAGCTTTGATTAATTAA 1029 0.3858 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIDLHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDVLVPSLATFSDHHIHHHHHHGLIANNNGSSLETFFPENPILNPQLYLPIIPSSILQAFDQQNVIDIKQQQLDNNNINYNNNGNNFHHHIQMPAETVVVPSMNTTVNPSSLYEDTWSSSSSFGCVLPLQEDHQISKNSSDHDIAITAATPSNYIIDKLIINNPVSTTWQQHFDLHHLMEPIVPKVCDINNTNIIEDYICGLPYSPASSSQQDPLARIHLALIN* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0296 342 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo18g0296 342 Gene3D - 11 67 - -
Amo18g0296 342 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo18g0296 342 PANTHER TRANSCRIPTION FACTOR MYB26 1 276 - -
Amo18g0296 342 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo18g0296 342 CDD SANT 17 61 IPR001005 -
Amo18g0296 342 Gene3D - 69 140 - -
Amo18g0296 342 PANTHER MYB DOMAIN PROTEIN 55 1 276 - -
Amo18g0296 342 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo18g0296 342 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Amo18g0296 342 CDD SANT 69 109 IPR001005 -
Amo18g0296 342 SMART sant 66 114 IPR001005 -
Amo18g0296 342 SMART sant 13 63 IPR001005 -
Amo18g0296 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo18g0296 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0296 Amo-Chr18 4121197 4122612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0296 1 118 MYB Transcription Factor Family AT3G13890 95.763 8.97e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo18g0296 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0296 K09422 - gmx:102662609 365.155