Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0288 ATGTCAAACTTCACTCCACCACCACCAACTCAAACTCATGGCCAAGTTAATAAGAAGAAGAGAAGCCTCCCTGGTAACCCAGACCCTGATGCTGAAGTGATAGCCTTGTCACCGAAGACTCTGATGGCGACAAACAGATTCTTATGCGAGATCTGTGGGAAAGGGTTTCAGAGGGACCAGAATCTGCAGCTGCACAGAAGAGGCCACAACTTGCCGTGGAAGCTGAAGCAGAGAACGAAGACGGAGGTGGTGAGGAAGAAGGTGTACGTGTGCCCGGAGCCAAGTTGCGTGCACCACGATCCCGGCAGAGCACTGGGAGACCTCACCGGAATCAAGAAGCACTTCAGCAGGAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCTAAGAAGTACGCCGTTCAATCCGACTGGAAAGCTCACTCCAAAACCTGCGGCACTCGCGAGTACCGATGCGACTGCGGCACCCTCTTCTCAAGGAGGGACAGTTTTATCACGCACAGAGCGTTTTGTGATGCGCTTGCAGAAGAAAGCGCGAGAGCTGTGACAGCTGTATCTCAGTCTCAATCTCATGAAATCCATGGATTCCCACTGAAGCAAGAGCAGCAAAGTAGTTTCAGCACCATGCCACCGTGGCTTGATTTCTCGTCAGTTACTCCAAGGTTGGATCTGGATGAACAAGTCCCAAATCGAAACCCTAACCCTAGCGGTGTAATTGGACCCACAGCGCACATGTCAGCCACTGCGTTGCTTCAGAAAGCAGCGCAGATGGGTGCAACCACCACCACCACCACCGTCAGCTCATCCGCACAACACTCACAGTCACAGCTCATCAGGACCCACCCGCAGGGTCACGTGTCTGACACTTTTGGTTTGAATTTGTCCTCACGTGACGACCCTACTGCTTTCGCTCACCATGGCTTCTTCCCGCCTCCTGCTTCTTCTCCGTCTCTCCTCCACCACGTCATCAACTCTTTTGACGACGCTTTTGGCGCCAACGACGGTGGTGGCGAGGGATTGACCAGGGATTTCTTGGGGCTTAGGCCTCTCTCTCATAGCGATATCCTCACCATTGCTGGTATCAGTAACTGCATCAACTCTACTTCTTCTTCTTCCCCGCATCATCATCACCAAAAGCCATGGCAAGATTAA 1155 0.5255 MSNFTPPPPTQTHGQVNKKKRSLPGNPDPDAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTKTEVVRKKVYVCPEPSCVHHDPGRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAVTAVSQSQSHEIHGFPLKQEQQSSFSTMPPWLDFSSVTPRLDLDEQVPNRNPNPSGVIGPTAHMSATALLQKAAQMGATTTTTTVSSSAQHSQSQLIRTHPQGHVSDTFGLNLSSRDDPTAFAHHGFFPPPASSPSLLHHVINSFDDAFGANDGGGEGLTRDFLGLRPLSHSDILTIAGISNCINSTSSSSPHHHHQKPWQD* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0288 384 MobiDBLite consensus disorder prediction 1 19 - -
Amo18g0288 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 69 IPR013087 -
Amo18g0288 384 Gene3D Classic Zinc Finger 43 70 - -
Amo18g0288 384 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 232 277 - -
Amo18g0288 384 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 11 195 - -
Amo18g0288 384 SUPERFAMILY beta-beta-alpha zinc fingers 46 144 IPR036236 -
Amo18g0288 384 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Amo18g0288 384 SMART c2h2final6 47 69 IPR013087 -
Amo18g0288 384 SMART c2h2final6 124 144 IPR013087 -
Amo18g0288 384 SMART c2h2final6 89 119 IPR013087 -
Amo18g0288 384 Gene3D Classic Zinc Finger 101 182 - -
Amo18g0288 384 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 232 277 - -
Amo18g0288 384 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 11 195 - -
Amo18g0288 384 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0288 Amo-Chr18 3969316 3972473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0288 18 371 IDZ Gene Family AT1G55110 53.234 4.10e-128 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo18g0288 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0288 K25870 - gmx:100819692 438.343