Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0253 ATGACCACCGTACCGGGACAGCTGGTTTGGGAGATCGTGAAGAAGAACAACTGTTTCTTGGTTAAGGAGTTTGGAAGGGGCACTCAGAGCGTTGAGTTCAGCAGAGAAGCCAACAATCTCTACAATCTCAACTCCTTCAAGTACTCTGGTTTGGCAAACAAGAAAACTGTTACTATTCAGCCAGCTGGAAAAGATCAGGCTGTGTTGCTTGCTACAACAAAGACAAAGAAGCAAAACAAGCCGGCTGCATTGCTTCATAAATCTATCATGAAGAAGGAGTTTCCTAGAATGGCAAAAGCAGTGAAAAAACAGGTTGCAGCTAACTACTACAGGCCTGATCTCACCAAGGCAGCTCTTGCAAGGTTGAGTGCTGTGAATAGGAGCCTCAGGGTTGCAAAGTCTGGTGTCAAGAAGAGAAACAGACAGGCTGTTAAGGTCCATGGCAGGAAGTGA 453 0.4592 MTTVPGQLVWEIVKKNNCFLVKEFGRGTQSVEFSREANNLYNLNSFKYSGLANKKTVTIQPAGKDQAVLLATTKTKKQNKPAALLHKSIMKKEFPRMAKAVKKQVAANYYRPDLTKAALARLSAVNRSLRVAKSGVKKRNRQAVKVHGRK* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0253 150 Gene3D - 6 133 - -
Amo18g0253 150 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
Amo18g0253 150 PANTHER 60S RIBOSOMAL PROTEIN L28-1-LIKE 1 150 - -
Amo18g0253 150 PANTHER 60S RIBOSOMAL PROTEIN L28 1 150 IPR002672 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0253 Amo-Chr18 3592762 3593882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0253 1 143 Cytoplasmic Ribosomal Protein Gene Family AT2G19730 74.825 5.96e-77 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0253 K02903 - gmx:100499921 263.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0423 19 5712280 5715273 Amo18g0253 18 3592762 3593882 ECH
Amo18g0253 18 3592762 3593882 Amo18g0253 18 3592762 3593882 ECH