Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0240 ATGAAGACGATCAAAGAGTTTTTCTTGAGGCACTACTATTCTCTTTGGTTGTCACCATCACTATCACCACCGTCACACATGGATCTCAACTACTTAGTATTCAATTCGGGATCAAGCAAGAGGAGGCAGAGCCAAATGATGAATTCTAACGCCGTAAAGAATCACGGAAACAGCGACGTTGCCACAAAACGAAGGAAGATCAACGAAGAGGAGGGGAGAGGCGAGTCATCCTCGATTTTCTCGTTCGTGTGCGAAATCTGCATTGACATTAAAACCGAAGCGGAAAATTTCTCTATAACCGGTTGCAGCCACTCATATTGTATGGATTACGTGGTGAAGTACGTTGGTTCTAGACTTGACGACAACGTGATTAATATCCGGTGTCCGGTGCCCTGGTGTGGTGGTTTCTTGGAACCCGAGGGTTGCCGCGAGGTTCTGCCAAGGATGGTTTTGGATCGGTGGGAGAAGTCATTATGTGAAGCTGCTGTTGTTGAGAACGAGAGCGAGAGATTCATGTATTGCCCCTTCAAGGACTGCTCTGCCCTTATGATCGTGGATGATGATTCACTGACGGAATCAAAATGCCCTAGCTGTAATAGGCAGATCTGCGTCACGTGTGAGGCAGTTTGGCATCATGGGATGATGTGCGAGGAATTTGGGAGGACAGAGAATGAAGATAGAGTGGTGATGGAGGTAGCGGCCAGGAACCGGTGGAAGAGGTGCCCAAACTGCAGGTTCTTTGTTGAGAAAAAACATTTCACGTGCGGTAAAATCCGTTGCAAGTGTGGATATTCGTTCTGTTACCACTGTGGAAAGAGTTGGGATTCCTGTTACCGCTCTATCTTCTGGGCTTTGGCGGATGGTACCGTGAACATAAAGTATGATATAGACAATGCATAA 900 0.4689 MKTIKEFFLRHYYSLWLSPSLSPPSHMDLNYLVFNSGSSKRRQSQMMNSNAVKNHGNSDVATKRRKINEEEGRGESSSIFSFVCEICIDIKTEAENFSITGCSHSYCMDYVVKYVGSRLDDNVINIRCPVPWCGGFLEPEGCREVLPRMVLDRWEKSLCEAAVVENESERFMYCPFKDCSALMIVDDDSLTESKCPSCNRQICVTCEAVWHHGMMCEEFGRTENEDRVVMEVAARNRWKRCPNCRFFVEKKHFTCGKIRCKCGYSFCYHCGKSWDSCYRSIFWALADGTVNIKYDIDNA* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0240 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 166 IPR013083 -
Amo18g0240 299 ProSiteProfiles TRIAD supradomain profile. 80 288 IPR044066 -
Amo18g0240 299 SUPERFAMILY RING/U-box 227 277 - -
Amo18g0240 299 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 44 275 IPR031127 GO:0004842|GO:0016567
Amo18g0240 299 MobiDBLite consensus disorder prediction 44 72 - -
Amo18g0240 299 SUPERFAMILY RING/U-box 82 161 - -
Amo18g0240 299 SUPERFAMILY RING/U-box 166 219 - -
Amo18g0240 299 Pfam IBR domain, a half RING-finger domain 154 216 IPR002867 -
Amo18g0240 299 Pfam IBR domain, a half RING-finger domain 233 275 IPR002867 -
Amo18g0240 299 SMART ibrneu5 217 277 IPR002867 -
Amo18g0240 299 SMART ibrneu5 152 216 IPR002867 -
Amo18g0240 299 Gene3D - 214 286 - -
Amo18g0240 299 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 44 275 - -
Amo18g0240 299 MobiDBLite consensus disorder prediction 58 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0240 Amo-Chr18 3370344 3371619 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0240 84 271 C3H Transcription Factor Family AT2G19610 26.923 1.67e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0240 K11975 - cit:102612755 233.417