Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0237 ATGGGACATGTTGATGACGCTCCAGTTGCAGTGAAGATGCTTTCTCAATCCTCAGTTCAAGGTTATCAGCAATTCCAAGCAGAGGTTAAGATTCTAATGAGAGTTCATCATAGAAATTTGACCTCCCTAGTTGGATATTGTAATGAAGGAAGCAATAAGGCTCTAATATACGAGTATATGGCTAATGGAAATCTACGTGAACATCTCTTAGGCACCAAATTCCTGAGCTGGAAAGACAGGCTCTGTATAGCGGTAGATGCAGCCCAAGGGTTGGAATATTTACACAATGGTTGCAAGCCACCTATAATCCACAGAGATGTAAAAGCTTCAAACATTTTGTTGACTGAAAACTTGCACGCAAAATTATCTGATTTTGGTTTGTCAAAAAGTATCCCAACGGATGGGAGGAGTCATGTTTCAACTGTTGTTGCTGGCACCGCTGGCTACTTGGATCCCAATTACTACCAATCAAGCAGATTAACAGAGAAGAGTGATGTTTATAGTTTTGGAGTTGTTCTTTTGGAGTTAATCACAAGTCAAGCAGCAATAAGAATGGCAGAAGATGATGATGATGATAATGATGGGAAAACTCATCACTTAAGTCATTGGGTTAGTTCGAAGGTGGAGAGAGGGGATATCCATGGCATTGTTGACTCGAGGTTAGGAGAAGACTTTGACTGTAGCTCTGCCTGGAAAATTGTGGAAACAGCATTGACTTGTGTGTCTCAAAACTCTAATGAAAGGCCAATCATGAGTGAGGTGTTGATTGAACTCAAGAACGCTTTGGCCATGGAATTAAGTCGAACAAACTATGGTGGTGGTGTCAACAATAATAATGGAGATTCATCGGTTGAACTGGTCTTTGTGAATGCAAATGAATCCACTCCTCTGGCCAGGTAA 900 0.41 MGHVDDAPVAVKMLSQSSVQGYQQFQAEVKILMRVHHRNLTSLVGYCNEGSNKALIYEYMANGNLREHLLGTKFLSWKDRLCIAVDAAQGLEYLHNGCKPPIIHRDVKASNILLTENLHAKLSDFGLSKSIPTDGRSHVSTVVAGTAGYLDPNYYQSSRLTEKSDVYSFGVVLLELITSQAAIRMAEDDDDDNDGKTHHLSHWVSSKVERGDIHGIVDSRLGEDFDCSSAWKIVETALTCVSQNSNERPIMSEVLIELKNALAMELSRTNYGGGVNNNNGDSSVELVFVNANESTPLAR* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0237 299 SMART serkin_6 1 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g0237 299 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE 2 270 - -
Amo18g0237 299 ProSiteProfiles Protein kinase domain profile. 1 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g0237 299 Pfam Protein tyrosine and serine/threonine kinase 6 255 IPR001245 GO:0004672|GO:0006468
Amo18g0237 299 Gene3D Phosphorylase Kinase; domain 1 2 60 - -
Amo18g0237 299 PANTHER OS07G0107800 PROTEIN-RELATED 2 270 - -
Amo18g0237 299 PIRSF ILK 2 203 - -
Amo18g0237 299 PIRSF ILK 228 270 - -
Amo18g0237 299 SUPERFAMILY Protein kinase-like (PK-like) 5 257 IPR011009 -
Amo18g0237 299 Gene3D Transferase(Phosphotransferase) domain 1 61 273 - -
Amo18g0237 299 ProSitePatterns Serine/Threonine protein kinases active-site signature. 102 114 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0237 Amo-Chr18 3348997 3351167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0237 2 299 Receptor kinase-like Gene Family AT1G51800 53.488 5.39e-111 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Amo18g0237 PK_Tyr_Ser-Thr 2.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0237 - - adu:107492765 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0237 18 3348997 3351167 Amo09g0319 09 3755267 3756151 hybridization