Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0234 ATGATATCTGAGATGAGGCCCAGTCAATCTCCACCGCCCAACGCCATCAACAACCATCACCACCACCAAATCAACAACAACAACAACAGCAGGGACCGCCGCCGCCGCAAGGACCTCACCCTGCCGCTTCCGCAGCGGGACACCAACCTCGCCGTGCCCCTCCCACTCCCTCCTACCTCCGCCCCCAGCTCCGGACCTAGCGGCCACCAGATCATCCCCTTCTCCGAGCTGGAGCGCCTGAAYCGCATCGGGAGCGGCAGCGGCGGCACCGTCTACAAGGTCCTCCACCGCACGACGAACCGCGTTTATGCCCTGAAGGTGATCTACGGTCACCACGAGGATTCGGTGCGTCGGCAGATCCACCGCGAGATCCAGATCCTSCGGGATGTGGACGATCMGAACGTGGTGAAGTGCCACGACATGTACGACCACAACGGTGAGATCCAGGTGCTTCTGGAGTTCATGGACGAAGGCTCCTTGGAAGGGAAACACATCCCTCAGGAGAATCACCTGGCGGATCTGGCTCGCCAGATCYTGAGGGGKCTGGCCTACCTGCACCGCCGCCACATCGTGCACCGCGACATCAAGCCGTCGAACCTGCTGGTCAACTCACGGAGGCAGGTGAAGATCGCTGACTTTGGCGTTGGGAGGATCCTGAACCAGACGATGGATCCCTGCAACTCGTCGGTGGGGACGATCGCGTACATGTCACCGGAGAGGATCAACACGGACATCAATGACGGACAGTACGACGCCTACGCCGGAGACATATGGAGCCTGGGGGTGAGCATTTTGGAGTTCTACATGGGGAGGTTCCCCTTCGCGGTTGGGAGGCAGGGCGACTGGGCCAGCTTGATGTGCGCGATTTGTATGTCTCAGCCACCAGAGGCGCCGCACACGGCGTCGCCTGATTTTAGGGATTTCGTGTCGCGGTGCCTGCAAAGGGATCCTTCTAGAAGGTGGACTGCTTCGAGGCTGCTCTCACACCCGTTCATTACGCATGGCGTCCCGCAGCAGACTCAGATTTCTCACAATCTCCATCAGCTGCTCCCTCCTCCCCCCAGACCCCTCCCTTCCTAG 1080 0.6019 MISEMRPSQSPPPNAINNHHHHQINNNNNSRDRRRRKDLTLPLPQRDTNLAVPLPLPPTSAPSSGPSGHQIIPFSELERLNRIGSGSGGTVYKVLHRTTNRVYALKVIYGHHEDSVRRQIHREIQILRDVDDXNVVKCHDMYDHNGEIQVLLEFMDEGSLEGKHIPQENHLADLARQILRGLAYLHRRHIVHRDIKPSNLLVNSRRQVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDINDGQYDAYAGDIWSLGVSILEFYMGRFPFAVGRQGDWASLMCAICMSQPPEAPHTASPDFRDFVSRCLQRDPSRRWTASRLLSHPFITHGVPQQTQISHNLHQLLPPPPRPLPS* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0234 359 MobiDBLite consensus disorder prediction 25 42 - -
Amo18g0234 359 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Amo18g0234 359 Gene3D Transferase(Phosphotransferase) domain 1 158 348 - -
Amo18g0234 359 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 31 353 - -
Amo18g0234 359 SUPERFAMILY Protein kinase-like (PK-like) 74 354 IPR011009 -
Amo18g0234 359 ProSiteProfiles Protein kinase domain profile. 77 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g0234 359 MobiDBLite consensus disorder prediction 1 71 - -
Amo18g0234 359 Gene3D Phosphorylase Kinase; domain 1 64 156 - -
Amo18g0234 359 Pfam Protein kinase domain 78 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g0234 359 MobiDBLite consensus disorder prediction 1 24 - -
Amo18g0234 359 CDD PKc_MAPKK_plant_like 75 334 - -
Amo18g0234 359 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 31 353 - -
Amo18g0234 359 SMART serkin_6 77 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g0234 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0234 Amo-Chr18 3311176 3313133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0234 5 348 MAP Kinase Kinase Gene Family AT1G51660 67.867 4.71e-167 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Amo18g0234 Pkinase 2.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0234 K13413 - gmx:100818488 551.977