Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0230 ATGAAGGACAAAGACAAGGACAAGGAAAAAGAGGCGGAGAAGAAGAAGTACCCTATCGGCGCCGAGCATTACGATCTCTACGAGGAGATTGGACACGGCGTCAGTGCCGCCGTCCACCGCGCGCTTTGCATCCCCTTAAACGAGATCGTCGCCATCAAGATCCTCGACTTCGAACGCGACAACTGCGATCTGAACAATGTTTCACGCGAAGCACAGACGATGGTGCTGGTGGACCACCCTAACGTGCTGAAATCGCACTGCTCCTTCGTCAACGAGCACAGCCTGTGGGTTGTGATGCCGTACATGGCGGGCGGATCGTGCCTCCATATCCTCAAGGCCGCGCACCCCGACGGATTCGAGGAGGTTGTGATTGCCACCATCCTTCGCGAGGTCCTCAAGGGTTTAGAATACCTTCACCACCACGGACACATCCACAGGGACGTCAAGTCCGGCAACATTCTCATCGATTCCCGCGGCGCCATCAAGCTCGGCGACTTCGGTGTCTCCGCCTGTCTCTTTGATTCCGGTGATAGGCAGCGCACCAGGAATACTTTTGTTGGAACACCTTTAATGGAGCAGCTACATGGTTATAATTTCAAAGCTGACATTTGGTCATTTGGCATAACTGCACTGGAGCTTGCCCACGGTCATGCTCCTTTCTCAAAGTTTCCCCCAATGAAGGTACTGCTTATGACTTTGCAAAATGCACCCCCCGGCCTTGACTACGAGAGGGATMGAAAGTTCTCTAAGTCATTTAAGCAGATGATTGCTAGTTGCTTAGTGAAAGATCCTTCAAAACGACCCTCTGCAAGCAAGTTGTTGAAGCATTCCTTCTTCAAGCAGGCTCGCTCCAATGATTATATTGCACGAACACTTTTGGAGGGGCTGCCTGCTTTAGGTGACCGCATGGAGGCCCTAAAGAGAAAAGATGAAGATATGCTTGCACAAAAGAAAATGCCCGATGGCGAGATGGAGGAATTATCACAGAAYGAATACAAACGGGGAATTAGTGGCTGGAACTTCAATCTTGATGATATGAAGGCTCAGGCTTCATTGATCCATGATTTTGATGATGCTATATCAGATATCAATCATGTAGCAAGTTCAGCTTCTTTATCTTCCCTTGATGTACAAGATAAGCCGAGTGCAAGTCATAATCCCTCTCGAAGTGTTGATCTGGAAGATATTGATGAGCTACAAAATCAATCAGCTTCTGTTCCAGSAATTGATTACACAGTAAATGATGCCAAGATCAAGTTTGAAAAATCTGACGATGACTCTAGCATTACCAGTTCAAGCCATGAACAAAGCATTTCACTAGCTTCTCCCTCCTGTCTTGATGATCGTGTGGACCATAATGTGGGAGAAAAATCTGATGTGGAAAACGGTATGGCTATCCATTCTTTTCATAGAAGAGGATCTTCATCAAGCATTTTACCTGAAGTAACTCTTCCACCAATTCGACCAGAAAGTGAGAAGCCACCCAATCTGCCCCAGAGCACCTCAAGTGGCAATGCAAATTCACAGACAGGAGAGGACGTGCTTACTGAACTTCCTTCTAAAATCTCAAAATCATCAGCTAATGCTGAAGAGACTGATGAGAAAGCAAAGATACCAGTTGTTCAGCAGAGAGGACGTTTTAAGGTTACATCTGAGAATGTTGACCCAGAAAAGGTGGCCCCTACTCCTGTACTGCAAAAGAGTCACAGTATGCAGATTATTAGCCAGCATAGTGCTCCTGCTCCTCTGCCTTCACCATTACCGTTACTGTCAGCATCTGATGCTACTATATCATCAAATCTTTCTGGCTGTTCACTTTTCCCGGTGTTGCACTCTGTGCTGCAGACAAATATTCTTCAAAGGGAGAGCATTTTAARTTTAATGAAGCAAATCAGTGCAAATGACACCACAGCTGATGCCACGTGTATCCCAGCACAAATAGCAGCTACTGAGAAATCTTTGCTTGAAGCAGCTCACGATAGGGAGAAAGAGTTACTCCATGAGATAACCGAGTTGCAGTGGAGGCTGATATGTACCCAAGAGGAGCTTCAAAAATTGAAGACAGATAACGCTCAGGTATGA 2082 0.464 MKDKDKDKEKEAEKKKYPIGAEHYDLYEEIGHGVSAAVHRALCIPLNEIVAIKILDFERDNCDLNNVSREAQTMVLVDHPNVLKSHCSFVNEHSLWVVMPYMAGGSCLHILKAAHPDGFEEVVIATILREVLKGLEYLHHHGHIHRDVKSGNILIDSRGAIKLGDFGVSACLFDSGDRQRTRNTFVGTPLMEQLHGYNFKADIWSFGITALELAHGHAPFSKFPPMKVLLMTLQNAPPGLDYERDRKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFKQARSNDYIARTLLEGLPALGDRMEALKRKDEDMLAQKKMPDGEMEELSQNEYKRGISGWNFNLDDMKAQASLIHDFDDAISDINHVASSASLSSLDVQDKPSASHNPSRSVDLEDIDELQNQSASVPXIDYTVNDAKIKFEKSDDDSSITSSSHEQSISLASPSCLDDRVDHNVGEKSDVENGMAIHSFHRRGSSSSILPEVTLPPIRPESEKPPNLPQSTSSGNANSQTGEDVLTELPSKISKSSANAEETDEKAKIPVVQQRGRFKVTSENVDPEKVAPTPVLQKSHSMQIISQHSAPAPLPSPLPLLSASDATISSNLSGCSLFPVLHSVLQTNILQRESILXLMKQISANDTTADATCIPAQIAATEKSLLEAAHDREKELLHEITELQWRLICTQEELQKLKTDNAQV* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0230 693 Pfam Protein kinase domain 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g0230 693 MobiDBLite consensus disorder prediction 377 402 - -
Amo18g0230 693 Coils Coil 669 693 - -
Amo18g0230 693 ProSiteProfiles Protein kinase domain profile. 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g0230 693 Gene3D Phosphorylase Kinase; domain 1 12 100 - -
Amo18g0230 693 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Amo18g0230 693 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 13 692 - -
Amo18g0230 693 CDD STKc_OSR1_SPAK 22 279 - -
Amo18g0230 693 SMART serkin_6 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g0230 693 Gene3D Transferase(Phosphotransferase) domain 1 105 331 - -
Amo18g0230 693 MobiDBLite consensus disorder prediction 494 526 - -
Amo18g0230 693 SUPERFAMILY Protein kinase-like (PK-like) 22 280 IPR011009 -
Amo18g0230 693 MobiDBLite consensus disorder prediction 449 466 - -
Amo18g0230 693 MobiDBLite consensus disorder prediction 424 537 - -
Amo18g0230 693 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 13 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0230 Amo-Chr18 3273120 3281711 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0230 13 675 MAP Kinase Kinase Kinase Kinase AT1G79640 62.427 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Amo18g0230 Pkinase 2.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0230 K08835 - gmx:100780339 1092.41