Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0222 CAGCTCTTTCTCCGCCAGAAGACGCACAATCTCAACCGTCTCGAGGCTCAGCGCAACGAGCTCAATTTTAGAGTGAGGATGCTCCGGGAGGAACTGCAGCTTCTCCAGGAGCCCGGATCGTATGTCGGTGAAGTTGTCAAAGTTATGGGAAAGAATAAAGTCCTAGTCAAGACATTTGATAAAATTCTTGGACATTTAACAATGATCTCACCATCCACAGGAGTTGTCATTGAGCTGCCAATTAAACATCCTGAACTGTTTGAAAGTCTTGGAATAGCTCAACCTAAGTATATGTTGGTCTTTTTGTTCTATTTGATTTGCATAACGTTTTTCCCATATTTGGCTGACGATCTCATGAATCACATGGGTGTTCTACTCTATGGGCCACCTGGTATTTGGAGAAAAACATTGTTGGCTAGGGCATTAAAATACATTGGAGAAGGTTCCAGAATGGTCAGGGAACTTTTTGTTATGGCCAGGGAGCATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATCTGCTCGAATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTGCAGCGCACTATGCTGGAACTTCTCAACCAGCTAGATGGATTTGAAGCTTCAAATAAAATCAAGGTTTTGATGGCCACAAACCGGATTGATATTCTGGATCAAGCCCTCCTTAGACCCGGACGAATTGACAGGAAGATTGAATTTCCAAACCCAAATGAGGAGTCTCGGCTAGATATTCTGAAAATCCATTCAAGAAGAATGAACTTAATGCGTGGCATTGATTTGAAGAAGATTGCTGAGAAGATGAATGGAGCATCTGGTGCAGAGCTTAAGGCTGTGTGCACAGAAGCTGGAATGTTTGCTTTGAGGGAGAGGAGAGTACATGTGACACAGGAGGACTTTGAGATGGCTGTGGCCAAGGTTATGAAAAAGGAAACAGAGAAGAACATGTCATTGCGGAAGTTGTGGAAGTGA 987 0.4347 QLFLRQKTHNLNRLEAQRNELNFRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKTFDKILGHLTMISPSTGVVIELPIKHPELFESLGIAQPKYMLVFLFYLICITFFPYLADDLMNHMGVLLYGPPGIWRKTLLARALKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKETEKNMSLRKLWK* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0222 328 Coils Coil 4 31 - -
Amo18g0222 328 PANTHER BNAA02G04630D PROTEIN 122 325 IPR035261 GO:0036402
Amo18g0222 328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 317 IPR027417 -
Amo18g0222 328 CDD AAA 123 240 - -
Amo18g0222 328 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 3 58 - -
Amo18g0222 328 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 122 325 - -
Amo18g0222 328 Gene3D - 246 323 - -
Amo18g0222 328 PANTHER BNAA02G04630D PROTEIN 76 101 IPR035261 GO:0036402
Amo18g0222 328 Pfam AAA+ lid domain 264 306 IPR041569 -
Amo18g0222 328 SMART AAA_5 120 243 IPR003593 -
Amo18g0222 328 PANTHER BNAA02G04630D PROTEIN 3 58 IPR035261 GO:0036402
Amo18g0222 328 ProSitePatterns AAA-protein family signature. 211 229 IPR003960 GO:0005524|GO:0016887
Amo18g0222 328 Pfam ATPase family associated with various cellular activities (AAA) 142 240 IPR003959 GO:0005524|GO:0016887
Amo18g0222 328 Gene3D - 141 242 IPR027417 -
Amo18g0222 328 Gene3D - 4 67 IPR012340 -
Amo18g0222 328 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 76 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0222 Amo-Chr18 3212009 3214958 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0222 76 295 Calmodulin-binding Proteins AT3G56690 37.395 3.28e-38 142