Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0205 ATGATGAATTACAGAAAACTTTCTTTGTTTTTCTGTGCTTTATCTATCTTTTATCCCTATCTGTGTTTCTCTGCCGATTTTGTTCCAGTAGATAACTACCTTATAGATTGTGGAGCAAGTTCTGGTACTGTAGTAGGTAACCGCAATTTCTCTGCGGATAGTGCTTCTAAGAAGCTATTATCCACTCAGCAAGATGTTCTTGCAAGTACTTCCTTGAAATCAATCACTTCCACTGGTGATTCCACTCTCTATCAAACTGCTAGGGTCTTCACTGGTTCCTCAAAGTACACTTTCTCAATCAAACAAAAAGGCAGACATTGGATCCGTCTTTATTTCTTTCCATTTACCTATCAGAAGTATGATATGAGTGCAGCGAAATTCTCGGTTGCCACGCAGAACAATGTCCTTGTTAGTGATTTTGGTGTGCAGAAAGATCCTGTGATGAAGGAATACTCTGTGAATGTGAGCTCTAATTCCCTTGTTATAGACTTTACCCCTTCGAGTGGTTCGATTGCCTTTGTGAATGCAATCGAAGTTGTTTCGGTCCCTGATGACCTCATTGATGATGTTGGTTTCAGCCTGACTAATGGATTATCAAGCTACTCTGGCTTGGCAGTACAGGCGCTGGAGACAGTCTGGAGGGTTAACATGGGGGGTCCAACTGTCTCCTCTGGTAATGACACTCTTCAGCGAACCTGGGATCCGGATCTTAGCTTCCTAAAAGAAAAAAACCTTGCTGCTAATTTCTCAAATATTGGAGGTGTTCAATATGTGAACGGCTCGGCTACTGAAAATGATGCTCCGGCTAGTGTTTATGGTACTGGACAACAGATGAACTCACAAAGTGATCCACGTGTTAATTTCAATGTGACATGGGAGTTTAAGGTGGATTCTGGATTTCAGTACCTTGTTAGACTTCACTTCTGTGATTTAGTGAGTAAAGGTCTCAATGAACTCTACTTCAATGTTTATGTTGATTCCTTGTTTGCTGCCAAGGATCTTGATCTTGCTTCAATAAATCAAAATGTCTTGGGTGTTCCATATTATAGGGATGTTGTTACACCCTTGACATCTAGCAACTTGCTTCGAGTAAGTATGGGACCTTCTAATGTAAATAAGGACTACCCTAATGCCATTCTGAATGGTTTGGAGATCATGAAAATGAACAATTCTGTGGGAAGTCTTAGTACAGGGACAGCTGCTGTTGCTACTACTTCTGGTTCAAATTCAAAGAATGTTGGTGTAATTGTGGGTGCAGTTCTTGGGGCAGTATGTGCAGTGGTCTTGGCTGGACTTTTGTGTTTACTATGCAGGAAAAGAAGGCGGTTGGCGCGGCGGAGACAGTCGAAGACATGGATTCCTTTCTCCATCAATGGCACAACTTCTCACACCATGGGAAGTAAATATTCTAATGGTACTACAATTAGTGCTGCTTCAAACTTCGAGTACCGTGTTCCTCTTGCTGCAGTTCAGGAAGCTACAAACAATTTTGATGAGAGTTGGGTTATTGGGATTGGTGGCTTTGGGAAAGTATACAAGGGGGAATTGAGTGATGGCACTAAAGTGGCAGTTAAGAGAGGAAATCCTCGGTCACAGCAGGGTATTGCCGAGTTCCGAACTGAAATCGAAATGCTGTCTCAGTTCCGTCACCGGCATCTGGTATCTTTGATCGGCTATTGTGATGAAAGGAATGAAATGATACTGATATATGAGTATATGGAGAAAGGAACACTCAAGGGTCATCTATATGGTTCGGGGTTCCCAACCTTAAGTTGGAAGGAGAGGCTTGAGATATGCATTGGAGCTGCTAGAGGGCTTCATTATCTGCACACCGGCTATGCTAAAGCAGTTATTCACCGCGATGTGAAATCTGCAAATATCCTCCTTGATGAGAACCTGATGGCTAAAGTTGCTGATTTTGGATTATCCAAGACTGGGCCAGAACTTGATCAGACACATGTGAGCACAGCTGTTAAAGGAAGCTTTGGCTACCTTGATCCTGAATACTTCAGGAGGCAGCAGCTAACAGAAAAGTCTGATGTGTATTCATTCGGCGTGGTTCTGTTTGAAGTTCTTTGTGCAAGACCTGTCATAGATCCGTCCCTTCCCAGGGAGATGGTAAACTTGGCAGAATGGGCAATGAAGTGGCAGAAGAAGGGGCAATTGGAGGAGATCATAGATCCTGCACTTGCAAGCAACATAAGACCGGAATCTCTCAGGAAGTTTGGAGAAACCGCGGAGAAATGCTTGGCAGACTTCGGTGTAGACAGGCCTTCTATGGGAGATGTATTGTGGAATTTGGAGTATGCCCTGCAGCTTCAAGAGTCTGCTACTCAAGGGAATGATCCTCAAGAAAACAGTACTAATATGATCAGTCTCTCTCCACAGGTCAACAACTTCAACAACGATGCAAGCGCCTCTGCCATTAAATTTGAAGGCACAAATGTGGATGATCTGTCTGGTGTTTCAATGAGTAGGGTGTTCTCTCAGTTGGTGAAGTCAGAGGGGAGATGA 2514 0.4332 MMNYRKLSLFFCALSIFYPYLCFSADFVPVDNYLIDCGASSGTVVGNRNFSADSASKKLLSTQQDVLASTSLKSITSTGDSTLYQTARVFTGSSKYTFSIKQKGRHWIRLYFFPFTYQKYDMSAAKFSVATQNNVLVSDFGVQKDPVMKEYSVNVSSNSLVIDFTPSSGSIAFVNAIEVVSVPDDLIDDVGFSLTNGLSSYSGLAVQALETVWRVNMGGPTVSSGNDTLQRTWDPDLSFLKEKNLAANFSNIGGVQYVNGSATENDAPASVYGTGQQMNSQSDPRVNFNVTWEFKVDSGFQYLVRLHFCDLVSKGLNELYFNVYVDSLFAAKDLDLASINQNVLGVPYYRDVVTPLTSSNLLRVSMGPSNVNKDYPNAILNGLEIMKMNNSVGSLSTGTAAVATTSGSNSKNVGVIVGAVLGAVCAVVLAGLLCLLCRKRRRLARRRQSKTWIPFSINGTTSHTMGSKYSNGTTISAASNFEYRVPLAAVQEATNNFDESWVIGIGGFGKVYKGELSDGTKVAVKRGNPRSQQGIAEFRTEIEMLSQFRHRHLVSLIGYCDERNEMILIYEYMEKGTLKGHLYGSGFPTLSWKERLEICIGAARGLHYLHTGYAKAVIHRDVKSANILLDENLMAKVADFGLSKTGPELDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPSLPREMVNLAEWAMKWQKKGQLEEIIDPALASNIRPESLRKFGETAEKCLADFGVDRPSMGDVLWNLEYALQLQESATQGNDPQENSTNMISLSPQVNNFNNDASASAIKFEGTNVDDLSGVSMSRVFSQLVKSEGR* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0205 837 SUPERFAMILY Protein kinase-like (PK-like) 474 768 IPR011009 -
Amo18g0205 837 ProSitePatterns Protein kinases ATP-binding region signature. 503 525 IPR017441 GO:0005524
Amo18g0205 837 Gene3D - 32 183 - -
Amo18g0205 837 Gene3D - 207 390 - -
Amo18g0205 837 ProSiteProfiles Protein kinase domain profile. 497 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g0205 837 SMART serkin_6 497 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g0205 837 PANTHER RECEPTOR-LIKE PROTEIN KINASE HERK 1 19 805 - -
Amo18g0205 837 PANTHER OS07G0166700 PROTEIN 19 805 IPR045272 GO:0004714|GO:0006468
Amo18g0205 837 Pfam Malectin-like domain 35 388 IPR024788 -
Amo18g0205 837 CDD STKc_IRAK 503 768 - -
Amo18g0205 837 Pfam Protein tyrosine and serine/threonine kinase 502 696 IPR001245 GO:0004672|GO:0006468
Amo18g0205 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Amo18g0205 837 Gene3D Phosphorylase Kinase; domain 1 458 572 - -
Amo18g0205 837 Gene3D Transferase(Phosphotransferase) domain 1 573 794 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0205 Amo-Chr18 2924223 2927672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0205 11 837 Receptor kinase-like Gene Family AT3G46290 65.431 0.0 1090
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Amo18g0205 Malectin_like 1.7e-40 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0205 - - gmx:100806488 1232.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0205 18 2924223 2927672 Amo18g0205 18 2924223 2927672 ECH
Amo18g0205 18 2924223 2927672 Amo13g0370 13 5055381 5058598 ECH
Amo18g0205 18 2924223 2927672 Amo08g1051 08 17878952 17881465 hybridization
Amo18g0205 18 2924223 2927672 Amo13g0370 13 5055381 5058598 PCT
Amo13g0370 13 5055381 5058598 Amo18g0205 18 2924223 2927672 PCT