Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0202 ATGGTTCTTAGAAAGGGATTGCTCATCGTTAACCACCAGGAGGGTTCTAACTGGGAAACATCGTTAAGTATGGAAAACGCTCGCTCCATCATAGCAAAATGGGACCCACTTCCCAACGGCAGCGAAAACAAAGACTCAACTCCTCTCTTCACTAACACGCGCCAAGAAGCCAAACGGTACCTTAACGCCGTTTCAAATCTACATTCCGCTATGCAACACCTCCTCACACTGGATTCCTCCTCGGACCAGCTCGTCGAGGCTTGTTCCCTGATGCAAGTCGCCATGAACAGGCTCGAGAGAGAGTTATATCGTGTATCGGCTGAGATTAGGGACCATGTTGACGATGATAATATTCGCCATGCTGCTGCCAAGGAGGATTTGAAGGCAATCGTGGAGTGTATGTTCTTCGCTGGATATGGCAAAGAGTGCGTCCAGATTTACTCCAAGGTCAGAAAGTCCAATGTCACTGAGGCACTGCAGAATCTCGGAGTGGAAAAGCCTAGGCTCTCTAAGATGAAGAAGATGCAGTGGGAGATGTTCGATTTTAAGATCAAGACCTGGCTCAACGCCGTCAAATTCGCCGTCGGAGCTCTGTTTCCCGTTGAGAGGAGTCTCATTAACCAAATCTTTCCCTCATCGGAGAACACGACCGTAGTCGAGTCCTGCTTCGCGGAGATTTGCAAAGACGGTGCCGAAATGTTGTTTCTGTTCCCTGAAATCATAGCAAAGTGCGAGAAAACGCCGGAGAAAATGTTCCGACTACTCGATCTCTACGAAGCACTCTCTCAAAATTGGCCTAAAATCAAGGACATATTCTCATACGAATCAACCTCAAGCGTAAGGTTACAAGTCGGAGTTTCACATATGAAAATCGGCGAGGCCGTTAGAGCAACGTTATCGGCCTTCGAATCGGCGATTACTAAGGAGTCATCAAAGACGCCGGTCCCCAGCGGCAGGATCCACCCGCTCACTCGCTACGTCATGAACTACATCTCATTCCTAGCCGATTACAGCGACGCGCTCACCAACATACTCATCGATTCGCCAAAGACTCCCATGCCGGAGTCCTACTTCCGGACACCGAAGCTCCCGGCGAAAACTCCAGCGCCTCCGGAGCTGGCGGAGCGGCTGGCGTGGGAGATTCTTCTGCTGCTCTGCAAGATCGACGGAAAAGCAGAGCTCTACAAGAACGTGGCGCTGGGTTACCTGTTTCTTGCGAACAACATGCAATACGTGGTCACAAAGGCGCGGAACACGAAACTAGGTTCCATCCTGGGCGACGATTGGCTCGCGAGTCACGATCAAAAGGTGAAGGAATACGCATCCAAGTACGTGAACATGGCGTGGAGTATGGTGGAGATGTCTCTGCCGGAGAATCCAAAAGCGGCGATGCAACCGGCGGAAGCTTCCGCCAAGTTCCATATCTTCAATATGGCGTTCCAGGAAGCGTGCCAGATGCAGTCCACGTGGATCGCACCTGACCTGAAACTGCGGGATGATATCCAGAAATCGGTTGTTTCGAAGCTGGTGCCTAAGTACCGGGATTTCTACGAGACGAATCGGGTCGGGTCGGATTCGGTTATAGCGTTCTCACCCGATGATTTGCAGAATCATATTTCTTTTATTTTGCATGATGTTGAAGATCCGGGCAGCATTACTACCCATTTTTCTTCCTTTCTTCGATAG 1686 0.503 MVLRKGLLIVNHQEGSNWETSLSMENARSIIAKWDPLPNGSENKDSTPLFTNTRQEAKRYLNAVSNLHSAMQHLLTLDSSSDQLVEACSLMQVAMNRLERELYRVSAEIRDHVDDDNIRHAAAKEDLKAIVECMFFAGYGKECVQIYSKVRKSNVTEALQNLGVEKPRLSKMKKMQWEMFDFKIKTWLNAVKFAVGALFPVERSLINQIFPSSENTTVVESCFAEICKDGAEMLFLFPEIIAKCEKTPEKMFRLLDLYEALSQNWPKIKDIFSYESTSSVRLQVGVSHMKIGEAVRATLSAFESAITKESSKTPVPSGRIHPLTRYVMNYISFLADYSDALTNILIDSPKTPMPESYFRTPKLPAKTPAPPELAERLAWEILLLLCKIDGKAELYKNVALGYLFLANNMQYVVTKARNTKLGSILGDDWLASHDQKVKEYASKYVNMAWSMVEMSLPENPKAAMQPAEASAKFHIFNMAFQEACQMQSTWIAPDLKLRDDIQKSVVSKLVPKYRDFYETNRVGSDSVIAFSPDDLQNHISFILHDVEDPGSITTHFSSFLR* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0202 561 Gene3D Exocyst complex component Exo70 41 546 - -
Amo18g0202 561 Coils Coil 95 115 - -
Amo18g0202 561 Pfam Exo70 exocyst complex subunit 186 540 IPR046364 GO:0000145|GO:0005546|GO:0006887
Amo18g0202 561 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 122 549 - -
Amo18g0202 561 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 23 118 - -
Amo18g0202 561 SUPERFAMILY Cullin repeat-like 47 540 IPR016159 -
Amo18g0202 561 PANTHER EXOCYST COMPLEX PROTEIN EXO70 122 549 IPR004140 GO:0000145|GO:0006887
Amo18g0202 561 PANTHER EXOCYST COMPLEX PROTEIN EXO70 23 118 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0202 Amo-Chr18 2874943 2876809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0202 24 540 EXO70 exocyst subunit family AT5G59730 43.106 4.96e-144 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0202 K07195 - adu:107461556 1093.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0202 18 2874943 2876809 Amo18g0202 18 2874943 2876809 ECH