Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0195 ATGGAAGACCCCTTAGGTTCCATATTCAATTCCCATCACGAGAGTGCTGATGAGTTGAGACAAAAGTTGAGCCTAACAAGAATCGAACTGGAGACTTTAAGAAGCGAGAACGTGGAACTGACGAACCTTTTGAACATGGCACAACAAGAGAGAGACGAAGCGAGGAACCAGCTTCAGAAGATGATGAAAGCACTGAAAATGATGAAGGGATTTTGTGTTGACGACAACAACAACAACAAGAACAACAACCTCGTATCACTTGCCGCCATTGCTAACAACACTAAAGCAAACTCAAGCATCACAGAATCAAACAGCCTCTCACGTGTTTCTTCTCCCGTTGATGCTGTTTCTTCATCACCAGAATTCTCAAACATGAACGTTAACAACGTTGTTGACTCTGGTTGTTTCTTCTATGAGAAGCCTGATCTTGATCCTGCAGATGCATTGATTGAGTGTCTCGCCAAGGGGAAAGTGTTGCCGCAGCAGGGGAAGCTTCTTGATGCTGTGGTGGACGCAGGTCCATTGCTCCGGTCTCTCATTCCGGCGGGGCCTCTTCCCACGTTTCGAAACCCGCCGCCATTACAGGACATCAAGGTTCCACCACTTTCAGTCAAAGGACTTGATTCCAGTGGGATCATTGAGTTGGGAAATTCCTTTGCAACAACAACAAACACTTGTTCTTGGAATTCACCTTCCTCTGTTCTCAACTTCGGTGGTGGTGGTTCTTGGAACAATGTTTTGCCGTTGACTTCAAATGTTTCTGGAGTCATGAAGTGTCCTTCCTCCTCGGAAGTTAACCCTTCAAGCTCCCCTAATGATCTGCAGCATCATCAAGTTGTCATTGAGTCCTTCCCTGATATCTCTTCTCTACAAAGCGACGGCTTAGACAGCTCCGTGATAAGTTCTCTTCCGGTGTCGGAGTTCGAAAATGTGGGAGACCACAAGTCTATTAACGCAGATTGTGTCATTTGTCTCGGGGAATTTGAAAAAGGGGAGAAGCTTAAGCTGCTTCCTCAATGTGCTCATGCTTTCCATGTTTCTTGCATAGATGCATGGTTTCAGTCTCATTCAAATTGCCCACTTTGCAGGTCCCAAGTCCATCATGTTGAAGATGCTATCGCCGGGTATTCAGTGTCTTTGTATCCATTGCTGGAAACTCTGAGGAGGGAAGACTTTTCCCGAGACAGCGATGAACTAATCCGATCCGTTCGGTCCGAGGTCATACAAAGCTGGGCAAGTAGACCACACACACTGTAA 1257 0.4622 MEDPLGSIFNSHHESADELRQKLSLTRIELETLRSENVELTNLLNMAQQERDEARNQLQKMMKALKMMKGFCVDDNNNNKNNNLVSLAAIANNTKANSSITESNSLSRVSSPVDAVSSSPEFSNMNVNNVVDSGCFFYEKPDLDPADALIECLAKGKVLPQQGKLLDAVVDAGPLLRSLIPAGPLPTFRNPPPLQDIKVPPLSVKGLDSSGIIELGNSFATTTNTCSWNSPSSVLNFGGGGSWNNVLPLTSNVSGVMKCPSSSEVNPSSSPNDLQHHQVVIESFPDISSLQSDGLDSSVISSLPVSEFENVGDHKSINADCVICLGEFEKGEKLKLLPQCAHAFHVSCIDAWFQSHSNCPLCRSQVHHVEDAIAGYSVSLYPLLETLRREDFSRDSDELIRSVRSEVIQSWASRPHTL* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0195 418 SUPERFAMILY RING/U-box 320 369 - -
Amo18g0195 418 Pfam Ring finger domain 320 363 IPR001841 -
Amo18g0195 418 SMART ring_2 321 362 IPR001841 -
Amo18g0195 418 Coils Coil 16 64 - -
Amo18g0195 418 ProSiteProfiles Zinc finger RING-type profile. 321 363 IPR001841 -
Amo18g0195 418 Pfam Protein of unknown function (DUF1635) 15 214 IPR012862 -
Amo18g0195 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 369 IPR013083 -
Amo18g0195 418 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 353 - -
Amo18g0195 418 CDD RING-H2_PA-TM-RING 320 363 - -
Amo18g0195 418 PANTHER ENABLED-LIKE PROTEIN (DUF1635) 1 353 IPR012862 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0195 Amo-Chr18 2811288 2814030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0195 289 374 C3H Transcription Factor Family AT5G17600 50.000 6.99e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0195 - - aip:107611905 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0195 18 2811288 2814030 Amo18g0195 18 2811288 2814030 ECH
Amo18g0195 18 2811288 2814030 Amo08g1039 08 17706933 17709309 hybridization
Amo18g0195 18 2811288 2814030 Amo13g0388 13 5223584 5226294 PCT
Amo13g0388 13 5223584 5226294 Amo18g0195 18 2811288 2814030 PCT