Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0193 ATGCCGATCTCTAAAATTGTGATTGGAAATGCTTCTGAGTTGAGGCAAAGCGATGCGCTTAAGGCCGCACTTGCTGAGTTCATCTCAATGCTTATCTTTGTTTTCGCCGGACAAGGCTCCGGCATGGCTTATAATAAGTTGACAAACAATGGCGCAGCAACACCAGCTGGCGTAGTGGCAGCATCATTGTCTCACGCCTTTGCTCTCTTTGTTGCAGTCTCCGTTGCCGCCAACATCTCCGGCGGCCACGTCAACCCTGCCGTCACTTTCGGCGCTTTCATTGGTGGCCACATCACTCTCCTCAGAACCATTCTCTATTGGATTGCTCAGTTGCTTGGCTCCGTTGTTGCTTGCTTGCTCCTTAAATTCGCCACAGCCGGACTCGAAACATCTGCATTTGCACTATCTTCTGGGGTTGGAGCATCGAATGCATTGGTGTTTGAGATTGTGATGACCTTTGGTCTCGTGTACACGGTGTATGCAACTGCCGTGGACCCAAAGAAGGGTGACGTTGGGATCATTGCTCCAATTGCCATTGGCTTCATTGTGGGTGCTAACATTTTAGCCGGTGGGGCATTTGATGGTGCATCCATGAACCCAGCTGTGTCTTTTGGGCCTGCTGTTGTTAGCTGGACTTGGGCCAACCACTGGGTCTACTGGGCCGGCCCATTCATTGGTTCTGCTATTGCAGCTATTGTCTACGACACTTTCTTTATTAACCACCACACTCATGAACCGCTCCCCGTCACAGATTACTAG 759 0.5046 MPISKIVIGNASELRQSDALKAALAEFISMLIFVFAGQGSGMAYNKLTNNGAATPAGVVAASLSHAFALFVAVSVAANISGGHVNPAVTFGAFIGGHITLLRTILYWIAQLLGSVVACLLLKFATAGLETSAFALSSGVGASNALVFEIVMTFGLVYTVYATAVDPKKGDVGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWANHWVYWAGPFIGSAIAAIVYDTFFINHHTHEPLPVTDY* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0193 252 Pfam Major intrinsic protein 13 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo18g0193 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Amo18g0193 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo18g0193 252 PANTHER AQUAPORIN-8 1 252 IPR034294 -
Amo18g0193 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Amo18g0193 252 PANTHER MAJOR INTRINSIC PROTEIN-RELATED 1 252 - -
Amo18g0193 252 SUPERFAMILY Aquaporin-like 13 246 IPR023271 -
Amo18g0193 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo18g0193 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo18g0193 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo18g0193 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo18g0193 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo18g0193 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0193 Amo-Chr18 2797350 2798595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0193 1 252 Major Intrinsic Protein MIP AT4G01470 79.365 2.75e-143 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0193 K09873 - gmx:547794 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0193 18 2797350 2798595 Amo18g0193 18 2797350 2798595 ECH
Amo18g0193 18 2797350 2798595 Amo13g0389 13 5233861 5235299 ECH
Amo18g0193 18 2797350 2798595 Amo08g1037 08 17687511 17688878 hybridization
Amo18g0193 18 2797350 2798595 Amo13g0389 13 5233861 5235299 PCT
Amo13g0389 13 5233861 5235299 Amo18g0193 18 2797350 2798595 PCT