Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0192 ATGGGACTTTATAGCAAAGGTTTCAGGTTTGAAGGTGGCGGGAGACACTTGATAGGTAATGCTTATTTGGGCATGATGCTTTTTGAAACCGCCACTCCCTTTAACCACCCAATTCTATATATTTTTGTTGTAGGTCTCAATCGAACTGGTAAGAGCTGCCGCCTCCGCTGGGTTAACTACCTCCACCCCGGCCTCAAACGTGGCAAGCTCACTCCCTTTGAAGAGAAGCTTGTCTTGGACCTCCACTCCAAGTGGGGCAATAGATGGTCAAGAATTGCTCGCAAGCTGCCCGGGCGCACGGACAACGAGATCAAGAATTACTTTAGAACTCACATGAGGAAGAAGGCTCAAGAGGAGAAGCGCGCGCTTGCATCACCAAGTTCTTCAAGCTGCCATTCCTCACTCTCTTCAAACAACAACAACAACCAAGCTGTTGATTCACATGCTTCCAAGAAAGCTGGAGAAGAGAGCTTCTATGACACAGGGGGGCCGGTCATGACTGTGGACTGCTCAACCGATTTGAAGGAAGAAGAAGGGTTCTCCATGGATGATATATGGAAAGATATTGAGCTTTGTGAAGAGAAGAACATTGTTGTTTATGATGGGAATAAGAGTGAAGAGGGTTGCAACTTCTCAAGTCCACCATCATGGGAGTATTCTTCTGACCCACTTTGGGTGATGGATGAACAAAGTGTGTTATTCCCAACTAGTGACCCATATTTTTCCTCATTTCTAACTGGCTAA 744 0.4624 MGLYSKGFRFEGGGRHLIGNAYLGMMLFETATPFNHPILYIFVVGLNRTGKSCRLRWVNYLHPGLKRGKLTPFEEKLVLDLHSKWGNRWSRIARKLPGRTDNEIKNYFRTHMRKKAQEEKRALASPSSSSCHSSLSSNNNNNQAVDSHASKKAGEESFYDTGGPVMTVDCSTDLKEEEGFSMDDIWKDIELCEEKNIVVYDGNKSEEGCNFSSPPSWEYSSDPLWVMDEQSVLFPTSDPYFSSFLTG* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0192 247 PANTHER TRANSCRIPTION FACTOR MYB48-LIKE ISOFORM X1 1 237 - -
Amo18g0192 247 MobiDBLite consensus disorder prediction 122 148 - -
Amo18g0192 247 MobiDBLite consensus disorder prediction 118 160 - -
Amo18g0192 247 CDD SANT 74 112 IPR001005 -
Amo18g0192 247 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo18g0192 247 SUPERFAMILY Homeodomain-like 47 117 IPR009057 -
Amo18g0192 247 SMART sant 66 114 IPR001005 -
Amo18g0192 247 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 237 IPR044676 GO:0003700|GO:0006355|GO:0043565
Amo18g0192 247 Gene3D - 69 155 - -
Amo18g0192 247 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Amo18g0192 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo18g0192 247 Gene3D - 28 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0192 Amo-Chr18 2794631 2796433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0192 1 228 MYB Transcription Factor Family AT3G46130 51.489 3.24e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo18g0192 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0192 K09422 - twl:120001543 254.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0192 18 2794631 2796433 Amo18g0192 18 2794631 2796433 ECH