Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0188 ATGGTAATCTTAATAAACAAAGCTTTGAACATATTTGATTTCGCAGGATTATCGTTTTACACTACCAAAGACCAGTTGAAGAACTTGTTTTCTCCTTTCGGACAAGTTACCGAAGTGAATCTGGTGATGGATTCCAGAACTGGAAGGACCAAAGGATTTGGTTTTGTTTCCTACCAATCTGAAAACGAAGCACTCAAGGCTATCAAAGCCATGAATGGCCGGATAATTGCAGGAAGGATTATTTTCGTTGAACCAGCTAAAGACACTAGATGA 273 0.3883 MVILINKALNIFDFAGLSFYTTKDQLKNLFSPFGQVTEVNLVMDSRTGRTKGFGFVSYQSENEALKAIKAMNGRIIAGRIIFVEPAKDTR* 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0188 90 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 88 IPR000504 GO:0003723
Amo18g0188 90 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN 15 86 - -
Amo18g0188 90 SMART rrm1_1 10 84 IPR000504 GO:0003723
Amo18g0188 90 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 80 IPR000504 GO:0003723
Amo18g0188 90 SUPERFAMILY RNA-binding domain, RBD 16 88 IPR035979 GO:0003676
Amo18g0188 90 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 15 86 - -
Amo18g0188 90 Gene3D - 13 90 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0188 Amo-Chr18 2726392 2726956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0188 24 87 Eukaryotic Initiation Factors Gene Family AT1G71770 42.188 5.19e-12 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0188 K13195 - mnt:21394118 100.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0188 18 2726392 2726956 Amo18g0188 18 2726392 2726956 ECH