Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0181 ATGGTTTTCCCTTCAATCCCAGTGTATTTAGATCCTCCCAGTTGGCACCACCAGCAGCAGCAGCAGGCAAATGGCAATGGCAATGAGAGTTCAACTCAGGTGGTTCCGAGATCGGGATCAGAGGGAGCACTCAAGTGTCCTCGGTGCGAATCAAGCAACACAAAGTTCTGCTACTTCAACAACTACAGCCTGTCTCAGCCGCGACACTTCTGCAAGACGTGTAGGCGTTACTGGACAAGAGGCGGTGCTCTTAGGAACGTTCCGGTTGGTGGTGGTTTCCGGAGAAACAAGAAGACCAAGAGGAGTAGCAGTAGCCGCCCAGGAGGAAACACTGAAAAGCAGTCAACATCAACATCATCACTTCCTTCCGGTTTTAACCCAGGTTTCATGGCTTCTCTTGAGAACATGACCCTCTATGGAGGAGGATTGCATCAGCATCAGCATCAGCAGCAGTTTCCTAATTTCTTGAGTGGTTTTGATCCAACTACCACTTCTTCTTCGTTCCCTTTCCTGTTTGGAGAATCTAGGGTTAAATTGGAATCTGGAAACGGAGGGCTATTAAGTAATAGTTTGTCAGAGAACTATTCATGGACTGATCTTGCAGCTGCATCTTCTTCCGCTGCTCATCATCTCTTGTGA 639 0.4804 MVFPSIPVYLDPPSWHHQQQQQANGNGNESSTQVVPRSGSEGALKCPRCESSNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKKTKRSSSSRPGGNTEKQSTSTSSLPSGFNPGFMASLENMTLYGGGLHQHQHQQQFPNFLSGFDPTTTSSSFPFLFGESRVKLESGNGGLLSNSLSENYSWTDLAAASSSAAHHLL* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0181 212 PANTHER DOF ZINC FINGER PROTEIN DOF2.4-LIKE 32 158 - -
Amo18g0181 212 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 32 158 IPR045174 GO:0003700|GO:0006355
Amo18g0181 212 Pfam Dof domain, zinc finger 43 98 IPR003851 GO:0003677|GO:0006355
Amo18g0181 212 ProSiteProfiles Zinc finger Dof-type profile. 44 98 IPR003851 GO:0003677|GO:0006355
Amo18g0181 212 MobiDBLite consensus disorder prediction 17 38 - -
Amo18g0181 212 MobiDBLite consensus disorder prediction 88 124 - -
Amo18g0181 212 MobiDBLite consensus disorder prediction 17 44 - -
Amo18g0181 212 ProSitePatterns Zinc finger Dof-type signature. 46 82 IPR003851 GO:0003677|GO:0006355
Amo18g0181 212 MobiDBLite consensus disorder prediction 103 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0181 Amo-Chr18 2648875 2650161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0181 12 105 C2C2-Dof Transcription Factor Family AT3G55370 62.766 9.53e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Amo18g0181 zf-Dof 1.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0181 - - adu:107461669 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0181 18 2648875 2650161 Amo18g0181 18 2648875 2650161 ECH